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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR06G23280.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 324aa MW: 35069.9 Da PI: 4.5556 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR06G23280.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 35.4 | 1.9e-11 | 162 | 204 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L
LPERR06G23280.1 162 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 204
79*********************66......****************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 324 aa
Download sequence Send
to blast |
MELDEQAFLE ELFSLRRDAW EYNAMGDFFS PACAAAAAAA AMDGSFQERH QPTTVSVLPT 60 FTASYDQAPP PAAATGFDCL SEVYGNAAAA FVPNAGAGGD YGGDMGFLDV VEPKANMVVD 120 GGIGVCKVEP GLADGGGGGF VPAAAPASKK KRVEGMPSKN LMAERRRRKR LNDRLSMLRS 180 VVPKISKMDR TSILGDTIDY MKELLERIRQ LQEEIEEQQQ ETPGVLSVFR ELNPNEMLAR 240 NTPKFDVERK EGGDTRVEIY CAAKPGLLLS TVSTLETLGL DIQQCVVSCF NDFGMHASCS 300 EVASSFSFIM LLFFMSKPNN LGAC
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 149 | 169 | KKRVEGMPSKNLMAERRRRKR |
2 | 163 | 170 | ERRRRKRL |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Sharma N, et al.
NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] - Chen YS, et al.
Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]
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