PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G22130.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARF
Protein Properties Length: 986aa    MW: 108173 Da    PI: 6.2729
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G22130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.98e-23151252199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  LPERR06G22130.1 151 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RD 240
                      99*****************************954.4444.49************************************************..56 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++++l+++++r+
  LPERR06G22130.1 241 EKQQLLLGIRRA 252
                      88889****997 PP
2Auxin_resp118.26.5e-39277360183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  LPERR06G22130.1 277 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 360
                      79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-43139280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-41143266IPR015300DNA-binding pseudobarrel domain
CDDcd100173.65E-19150242No hitNo description
PfamPF023629.7E-21151252IPR003340B3 DNA binding domain
SMARTSM010191.6E-22151253IPR003340B3 DNA binding domain
PROSITE profilePS5086311.801151253IPR003340B3 DNA binding domain
PfamPF065071.2E-33277360IPR010525Auxin response factor
PfamPF023093.1E-9850937IPR033389AUX/IAA domain
PROSITE profilePS5174527.52852936IPR000270PB1 domain
SuperFamilySSF542774.61E-7864931No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 986 aa     Download sequence    Send to blast
MMKQPQQQPA SSPATATTSA MAAAAAAAPA VGNGGEGEKK APAINSELWH ACAGPLVSLP  60
PAGSLVVYFP QGHSEQVAAS MQKDVDAHVP SYPNLPSKLI CLLHNVTLHA DPETDEVYAQ  120
MTLQPVTSYG KEALQLSELA LKQARPPTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL  180
DFSMQPPAQE LQARDLHDNV WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD  240
EKQQLLLGIR RANRQPTNIS SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF  300
VIPFAKYQKA VYGNQISLGM RFRMMFETEE LGTRRYMGTI TGISDLDPVR WKNSQWRNLQ  360
VGWDESAAGE RRNRVSIWEI EPVAAPFFIC PPPFFGAKRP RQLDEESSEM ENLLKRAMPW  420
LGEEICIKDP QTQNTIMPGL SLVQWMNMNM QQSSSFANTA MQSEYLRSLS NPNLQNLGAA  480
DLSRQLSMQN QLFQQNNIQF NSPKLSQQMQ PVDELSKATI PLNQLGLSNS QTLPQQQMMP  540
QQSTKVPSQN TPLPLPVQQE PQQKLLQKQA MLADTSEAAV PPTTSANVIA TTGSPLMTTG  600
ATHSVLTDEI PSCSTSPSTA NGSHLLQPIL GRNKHGSMIN TEKVPQSTAP ISVPGSLEAV  660
TATTRMIKES PKLNHNVKQS LVASKLANAG AGSQNFVNNP PPTDYMETAS SATSVWLSQN  720
DGLLHQNFPM SNFNQPQMFK EATPDTEIHA ANTSNNALFG INGDGPLGFP MGTDDFLSNG  780
IDASKYENHI STEIDNSYRV PKDAQQEISS SMVSQSFGAS DMAFNSIDSA INDGGLLNRS  840
SWPPAPPLKR MRTFTKVYKR GAVGRSIDIS QFSGYDELKH ALARMFSIEG QLEERQRIGW  900
KLVYKDHEDD ILLLGDDPWE EFVGCVRCIR ILSPQEVQQM SLDGCDLGNN FLPNQACSSS  960
DGGNAWRARC DQNSGNPSNG SYEQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1724038147388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G22130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1033120.0AK103312.1 Oryza sativa Japonica Group cDNA clone:J033125G19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023739623.10.0auxin response factor 19-like
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A0D9WTU40.0A0A0D9WTU4_9ORYZ; Auxin response factor
STRINGLPERR06G22130.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]