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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G21240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 188aa MW: 19984.2 Da PI: 7.3463 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.5e-18 | 14 | 63 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp k++ ++lg+f++ae Aa+a++aa+++l+g LPERR06G21240.1 14 RYRGVRKRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAARSLRG 63 59*******.7*********83...36*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.6E-34 | 14 | 77 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-11 | 14 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-21 | 14 | 72 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-29 | 14 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.71E-16 | 14 | 70 | No hit | No description |
PROSITE profile | PS51032 | 21.97 | 14 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-8 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-8 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MRKSKQPQPS PEIRYRGVRK RPSGRYAAEI RDPAKKTPIW LGTFDSAEAA ARAYDAAARS 60 LRGPTARTNF PSATPSPPPP RPPPAAATAA TSSHSSTVES WSGGAIRAAA STLARSAAPM 120 ETAEEEEEDC HSYCGSSSSV LCVDGSDDAA ASRAPRPFDL NMPPPPEEVD MATVADQMGI 180 RYDTLLRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-19 | 14 | 71 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G21240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003935 | 0.0 | AP003935.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0661G04. | |||
GenBank | AP005457 | 0.0 | AP005457.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0532H03. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641022.1 | 1e-83 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A0D9WTH3 | 1e-130 | A0A0D9WTH3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G21240.1 | 1e-131 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6102 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 2e-19 | ethylene responsive element binding factor 4 |