PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G21020.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARF
Protein Properties Length: 765aa    MW: 83357.8 Da    PI: 7.3571
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G21020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37e-24194295199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+  ++
  LPERR06G21020.1 194 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--RT 283
                      89****************************996555555..8999*********************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++ l+v+++r+
  LPERR06G21020.1 284 DNGDLCVGIRRA 295
                      78888****996 PP
2Auxin_resp112.73.5e-37357440183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa+ a ++++FevvY+Prast+eF+vk+  v++a+++++ +GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  LPERR06G21020.1 357 AANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 440
                      688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-37184297IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-28190296IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-20193294No hitNo description
SMARTSM010194.8E-21194296IPR003340B3 DNA binding domain
PfamPF023623.3E-22194295IPR003340B3 DNA binding domain
PROSITE profilePS5086312.971194296IPR003340B3 DNA binding domain
PfamPF065073.5E-32357440IPR010525Auxin response factor
PROSITE profilePS5174524.301679762IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MSAAVWGNLE AAAHLRERQK QQSRAEREER VAEQGKIELC CRDCPFKFII LQAADQITEE  60
DFYKMITFVD SAAKERERES TDNKCLDPQL WHACAGGMVQ MPPVSSKVYY FPQGHAEHAQ  120
AVDFPSGAGR VPPLILCRVA GVRFMADPDT DEVFAKIRLV PVRANDGAAD DGGIGAGTDA  180
AAAAAAAEEK PASFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSADPP VQTVLAKDVH  240
GVVWKFRHIY RGTPRRHLLT TGWSTFVNQK KLVAGDSIVF MRTDNGDLCV GIRRAKKGGV  300
GCPELPPPIS PAAANYGGGG FSMFLRGGDD DCSNNKMSPA ARGKIRARVR PEEVVEAANL  360
AVSGQPFEVV YYPRASTPEF CVKAGAVRAA MRTQWFAGMR FKMAFETEDS SRISWFMGTV  420
SAVQVADPIR WPNSPWRLLQ VSWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LAPFSPPRKK  480
LCVPLYPELP IDGQFPTPMF HGNPLARGVG PMCYFPDGTP AGIQGARHAQ FGISLTDLHL  540
NKLQSSLSPH GFHQLDHGIQ PRIAAGLIIG HPTARDDISC LLTIGTPQNN KKSDGKKAPA  600
QLMLFGKPIL TEQQISLGDA APMAVRKSSS DGDAEKTVNK SNSDVSSPRS NLNGATDNMS  660
CGGVPLCQDN KVLDVGLETG HCKVFMQSED VGRTLDLSVV SSYEELYRRL ADMFGIEKAE  720
LMSHVFYRDA AGALKHTGDE PFSEFTKTAR RLNILTDTSG DNLAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-796746132388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G21020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712990.0AB071299.1 Oryza sativa OsARF10 mRNA for auxin response factor 10, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644137.10.0auxin response factor 18
RefseqXP_015644138.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0D9WTE60.0A0A0D9WTE6_9ORYZ; Auxin response factor
STRINGLPERR06G21020.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]