PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G20820.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 453aa    MW: 47169.6 Da    PI: 8.776
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G20820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00052211233223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C+ Cg +Fs+ + L +H  + H
  LPERR06G20820.1 211 RCHRCGDRFSTLDALDSHHLSlH 233
                      7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.704210238IPR007087Zinc finger, C2H2
PROSITE patternPS000280212233IPR007087Zinc finger, C2H2
SuperFamilySSF563992.45E-18235452No hitNo description
Gene3DG3DSA:3.90.228.102.0E-10252428IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
METIYLLSGK LMQSDCPARK GKMPTVWAAL KKSLNCKSGD SCGVIERANS KSHGGASITA  60
GKKSSSSSAA ATAAAARLRR SGCSRSIANL RDVIHSRRQD AAAATVAGEG CGSPMSIGSN  120
DVLNPVTHDV LLAAGGPDAA MRELRIGTPG RGGPYSPLLL RCSTTPVVST RKSPSTMSPL  180
RTAGAAVTDT DDDDDTPSPA PARSSCDVGV RCHRCGDRFS TLDALDSHHL SLHAVTELVE  240
GESSRKVVEI ICKAGWPKSE NPPCHRVLKV HNAASSVSRF EEFRETVKSR AAKLTTTKRH  300
PRCLADGNEL LRFHATTLSC SLAGAGAGGG VCASGNGCGV CRIIRHGFSA ARDVKDGVGV  360
FTTSTSKRAL DDCVAAGDGE VEAGVRKALL VCRVVAGRIH RPLDNLQEAV ATAAAQPGFD  420
SVAGKVGDYG SIEELYLLNP RALLPCFVVV CKA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G20820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657258.10.0PREDICTED: uncharacterized protein LOC102713921
TrEMBLA0A0D9WTC40.0A0A0D9WTC4_9ORYZ; Uncharacterized protein
STRINGLPERR06G20820.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-91C2H2 family protein