PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G19480.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family SBP
Protein Properties Length: 408aa    MW: 43386.7 Da    PI: 8.964
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G19480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.13.9e-41165241177
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      +Cq+egC+adls ak+yhrrhkvCe h+ka+vv+++g++qrfCqqCsrfh l+efDe+krsCr+rLa+hn+rrrk++
  LPERR06G19480.1 165 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAAAGKQQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNRRRRKPA 241
                      6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.8E-35158227IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.47163240IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.15E-38164243IPR004333Transcription factor, SBP-box
PfamPF031104.5E-31166239IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MMSGRMNSAG DEYAFAAAAQ FVGFDHAAAA QRAGMQHHHH IYDHGLDFAT AMHHQFQPDS  60
SAPPQLLPLP PTMSSMAPPP PMLPMPMQIP MPMPMAAPDV YPALGGGGVV KREGGGDAGR  120
IGLNLGRRTY FSPGDMLAVD RLLMRSRLGG VFGLGFGGAH HQPPRCQAEG CKADLSGAKH  180
YHRRHKVCEY HAKASVVAAA GKQQRFCQQC SRFHVLTEFD EAKRSCRKRL AEHNRRRRKP  240
AATALSQATA KDAAASPASA GKKPTGATSS YTGDNKNMGA MSAAKSPISS NTSVISCLAG  300
EQSKQQPPAL TLGAAPPSHD TSSHLAGAVL HHHQHHSHQE HLQMSSLVHI NGGGSNNNNI  360
LSCSSVCSSA LPSTATNGEV SDQNNNDNSH NNNGSNNNNM HLFEVDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-291662391184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222239KRSCRKRLAEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G19480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656320.21e-136PREDICTED: squamosa promoter-binding-like protein 10
SwissprotA2YFT91e-133SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE81e-133SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLA0A0D9WSU10.0A0A0D9WSU1_9ORYZ; Uncharacterized protein
STRINGLPERR06G19480.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.15e-49squamosa promoter binding protein-like 8