PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G19450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | AP2 | ||||||||
Protein Properties | Length: 464aa MW: 49803.5 Da PI: 6.5672 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.9 | 9.1e-12 | 124 | 180 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g LPERR06G19450.1 124 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 180 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47.4 | 4.6e-15 | 223 | 274 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g LPERR06G19450.1 223 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 274 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.03E-17 | 124 | 190 | No hit | No description |
Pfam | PF00847 | 3.2E-9 | 124 | 180 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.15E-15 | 124 | 189 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-12 | 125 | 189 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-22 | 125 | 194 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.477 | 125 | 188 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 126 | 137 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.15E-18 | 223 | 284 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.8E-10 | 223 | 274 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.74E-23 | 223 | 284 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.9E-18 | 224 | 283 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 224 | 282 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 224 | 288 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 264 | 284 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MDMDMSSAYP HHWLSFSLSN NNYHHGLLEA LSTSSAPPLD GAAEEAPKME DFLGGVGGGS 60 AAPAAAPEDQ LGCGGELGSI AAGFMRRYPT PDENPGGVTI AMATDAVEAD PARRTAETFG 120 QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQSRKGRQGG YDKEEKAARA YDLAALKYWG 180 PTTTTNFPVA NYEKELEEMK SMTRQEFIAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR 240 IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN FDMSRYDVDS ILNSDLPVGG 300 GAASAATRAA KFPSDPSLPP PHGAGASAAM TPSEKDYWSL LALHYQQQQQ QQQQFPASAF 360 DTYGCSSGVN VDFTMGTSSH SGSNSSSSSA MWGTAAAMGQ QDSSNRQSNS YSSHHNIPYA 420 SAAAAAAMAS GSAGYEGSTG NNGTWVASNT STAPHFYNYL FGME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G19450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101959 | 0.0 | AK101959.1 Oryza sativa Japonica Group cDNA clone:J033075O07, full insert sequence. | |||
GenBank | HQ858843 | 0.0 | HQ858843.1 Oryza sativa Japonica Group isolate UT1531 AP2-EREBP transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641575.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-125 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A0D9WST8 | 0.0 | A0A0D9WST8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G19450.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-117 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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