PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G18460.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 469aa    MW: 51389.3 Da    PI: 6.7161
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G18460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57e-18115164155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  LPERR06G18460.1 115 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 164
                      78*******************......55************************997 PP
2AP240.28.5e-13207255153
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                      s+++GV+ +k  g+W+A+I         +k+++lg ++t+ eAaka+++a+ + 
  LPERR06G18460.1 207 SRFRGVTLHK-CGKWEARIGQlM----GKKYVYLGLYDTEMEAAKAYDKAAIRC 255
                      789*******.7******77733....25**********77*********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.2E-10115164IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-15115173IPR016177DNA-binding domain
CDDcd000181.04E-10115171No hitNo description
PROSITE profilePS5103217.688116172IPR001471AP2/ERF domain
SMARTSM003801.7E-31116178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-17116172IPR001471AP2/ERF domain
PfamPF008471.2E-8207257IPR001471AP2/ERF domain
CDDcd000181.91E-23207267No hitNo description
SuperFamilySSF541711.11E-16207266IPR016177DNA-binding domain
PROSITE profilePS5103214.75208265IPR001471AP2/ERF domain
SMARTSM003804.0E-32208271IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-17208266IPR001471AP2/ERF domain
PRINTSPR003672.7E-5209220IPR001471AP2/ERF domain
PRINTSPR003672.7E-5247267IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MAATKRAFYG VGSIALAMHG DDDDEVEEEE ELLEEGSGRI FGLTVPAGGD FVRPAVVTQQ  60
LFPMTTATAV VVPEATEQRL AMEQCHLAAA VTAGAEQWAR PPSRKTRRGP RSRSSQYRGV  120
TFYRRTGRWE SHIWDCGKQV YLGGFDTAQA AARAYDQAAI KFRGVEADIN FTLDDYKEDI  180
KKMNNFSKEE FVQVLRRQGA CFVRGSSRFR GVTLHKCGKW EARIGQLMGK KYVYLGLYDT  240
EMEAAKAYDK AAIRCCGKEA VTNFDTQAYE DELNLQSWNG ELDLELSLGC SGSERAGDPA  300
ADEVLHPAPS NQRTSLTFNL PEVYEEETRP CHRQRSIWLR PSLAPAMPNG GVVMRPDQHH  360
HYHHHPSSRN MLLMSQVISS SGGGGMHGAA AAAELHMRPP PHHCWPNNGG SSNNNNNWLP  420
YASARPRLPL PGRAAADDDD ANVSNAADAA SSGFPVGQAS SSSSTATGR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G18460.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642711.10.0ethylene-responsive transcription factor RAP2-7
SwissprotA0A0N7KMH00.0AP24_ORYSJ; APETALA2-like protein 4
TrEMBLA0A0D9WSF90.0A0A0D9WSF9_9ORYZ; Uncharacterized protein
STRINGLPERR06G18460.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.23e-86AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]