PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G17640.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 541aa    MW: 58418.8 Da    PI: 6.7486
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G17640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.6e-07285303826
                      GGGGTS--TTTTT-SS-SS CS
          zf-CCCH   8 ffartGtCkyGdrCkFaHg 26 
                      +++rt  C++G++C+F H 
  LPERR06G17640.1 285 RWSRTSGCPFGSSCHFLHN 303
                      7*****************7 PP
2zf-CCCH19.91.3e-06345370227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+ C+ +     Ck G++C+FaHg+
  LPERR06G17640.1 345 KTRMCNKYNTAEGCKWGNKCHFAHGE 370
                      9***********************96 PP
3zf-CCCH35.61.6e-11507532127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC +f + G C +GdrC+FaHg+
  LPERR06G17640.1 507 FKTKLCENFNK-GSCTFGDRCHFAHGE 532
                      69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF147361.1E-2753153IPR026750Protein N-terminal asparagine amidohydrolase
PfamPF147361.9E-39155288IPR026750Protein N-terminal asparagine amidohydrolase
SMARTSM003562.2282304IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4285303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4286303IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.958286305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-13340375IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.587343371IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-8343374IPR000571Zinc finger, CCCH-type
SMARTSM003560.8343370IPR000571Zinc finger, CCCH-type
SMARTSM003221.2E-9412482IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.0E-14413481IPR004088K Homology domain, type 1
PROSITE profilePS5008414.76413477IPR004088K Homology domain, type 1
CDDcd001052.58E-12415477No hitNo description
PfamPF000134.0E-10415478IPR004088K Homology domain, type 1
SuperFamilySSF547918.47E-15415511IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.105.6E-16504537IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7506532IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131506533IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-8506536IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9507532IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0008418Molecular Functionprotein-N-terminal asparagine amidohydrolase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MLLVDGEPVS GSSRGGIDGG RELVAALMGN PGLRAASERL RDAPERRISS GPEEEAEAPR  60
HVYVFQREFA TVDPARVQLV GTDEVTTCVG VVIRNNKTGM TSISHMDFPK IVEGGVEQML  120
ELLGDDNSPF DVCIFPSIAL QNVHLIGGFD DASTKVETSS GAVSPASFDM NSRCPDEVVR  180
RIRVSVSSYD PTWQGRLLET YDTHSDAFHI AAACWMPDWA EIASSLNQLS DSEVLLQCST  240
SPAAEPPHFV ENERRIWRYL IENPYWEDTF PKYKPRVFHR TSDGRWSRTS GCPFGSSCHF  300
LHNFPGGYQA VTKLTNLGGP AVAAPPGRMP LGLGAPNGPP TSSLKTRMCN KYNTAEGCKW  360
GNKCHFAHGE RELGKPMMLD NSMPHPMGSM PNGQFEPPMP GPDIVPPSTF GASATAKISV  420
DASLAGGIIG KGGTNTKHIS RVTGAKLAIR ENESNPNLKN IELEGTFDQI KHASAMVTEL  480
IVRISGNAPP AKNQGRGSHA GGPGNNFKTK LCENFNKGSC TFGDRCHFAH GESELRKSTA  540
A
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G17640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036090.0AP003609.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0012B02.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9WS580.0A0A0D9WS58_9ORYZ; Uncharacterized protein
STRINGLPERR06G17640.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1034022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-43C3H family protein