PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G17540.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 302aa    MW: 31555.3 Da    PI: 9.4221
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G17540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.22.9e-08157184431
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkas 31 
                      +h+ +Er RR++iN ++e L+el+P +s
  LPERR06G17540.1 157 SHSLAERARREKINARMELLKELVPGCS 184
                      8************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.29E-6151185No hitNo description
SuperFamilySSF474596.54E-8151185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.804153217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-8156183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-6157184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MRHPSTPPEL TAAGGEIQPL IPASSAARSS SSGGGGSFTA LLGLPTSQAM ELLLPAAAAA  60
SASAAPTFPS DPNLVDRAAR FSAFASPSPS SPSPTPPPPP SSSSKRKATD PSSKGKAAKK  120
GKTAASGGGE DGKDGDGEDE KPAYVHVRAR RGQATDSHSL AERARREKIN ARMELLKELV  180
PGCSKYLSMR LAAVNPRVDF GGLDNFLTTE CGRITGLNYK NGMDLEQVTW PDMGVHGARN  240
LMQLQQQVWH GDLAHPLQPA SQWEKRADTN PPVFSNSSSS LFGYDLASSG APAQTGKLKT  300
EL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G17540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0709701e-162AK070970.1 Oryza sativa Japonica Group cDNA clone:J023066J03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177484.11e-130transcription factor bHLH48-like isoform X1
TrEMBLA0A0D9WS470.0A0A0D9WS47_9ORYZ; Uncharacterized protein
STRINGLPERR06G17540.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69322735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-29bHLH family protein