PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G17470.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 416aa    MW: 45421.4 Da    PI: 7.1272
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G17470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05251270120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++Cp C k+F+r  n++ H+
  LPERR06G17470.1 251 FSCPVCYKTFNRYNNMQMHM 270
                      89*****************9 PP
2zf-C2H2140.00015335357123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +Cgk F  + + ++H +++
  LPERR06G17470.1 335 FMCRKCGKAFAVRGDWRTHEKNC 357
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.14E-5247273No hitNo description
PROSITE profilePS501579.743251278IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.5E-6251270IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.45251273IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280253273IPR007087Zinc finger, C2H2
SuperFamilySSF576671.91E-6320355No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5331355IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549335355IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808335355IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MLSPSSPTFS SNPSISSSSS SSSMGDPYTN FLRGYHRSHP LHFPPPPPPP PYAASSSSFS  60
GLFSSYLHHP PPPPPSSPPI REALPLLSLT PSNTHLIPSH QLDDLRRHDQ DHKQEEKITN  120
EENPHKNIAT SRSNDNCQET AADQTAAAGE VTVALHIGLP SSSAAAAASA GSGGSGHDHH  180
QQEAAGEGAR ISGREMQEEE EEKEGGDQEG EEEETMTTLP LGCASIGIGK LNKGQYWIPT  240
PSQILIGPTQ FSCPVCYKTF NRYNNMQMHM WGHGSQYRKG PESLRGTQPT AMLRLPCYCC  300
AAGCRNNIDH PRARPLKDFR TLQTHYKRKH GIKPFMCRKC GKAFAVRGDW RTHEKNCGKL  360
WYCACGSDFK HKRSLKDHIR AFGRGHSACG IDSFDADELD DEPSSDLDHG TSGGAS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G17470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0711040.0AK071104.1 Oryza sativa Japonica Group cDNA clone:J023078D20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693889.11e-175PREDICTED: LOW QUALITY PROTEIN: zinc finger protein WIP2
SwissprotQ9SVY11e-130ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0D9WS350.0A0A0D9WS35_9ORYZ; Uncharacterized protein
STRINGLPERR06G17470.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-117C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]