PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

C2H2

Protein Properties

Length: 416aa MW: 45421.4 Da PI: 7.1272

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR06G17470.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	251	270	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ LPERR06G17470.1 251 FSCPVCYKTFNRYNNMQMHM 270 89*****************9 PP
2	zf-C2H2	14	0.00015	335	357	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ LPERR06G17470.1 335 FMCRKCGKAFAVRGDWRTHEKNC 357 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.14E-5	247	273	No hit	No description
PROSITE profile	PS50157	9.743	251	278	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.5E-6	251	270	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.45	251	273	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	253	273	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.91E-6	320	355	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.2E-5	331	355	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	49	335	355	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.808	335	355	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009860	Biological Process	pollen tube growth
GO:0010500	Biological Process	transmitting tissue development
GO:1990058	Biological Process	fruit replum development
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MLSPSSPTFS SNPSISSSSS SSSMGDPYTN FLRGYHRSHP LHFPPPPPPP PYAASSSSFS 60 GLFSSYLHHP PPPPPSSPPI REALPLLSLT PSNTHLIPSH QLDDLRRHDQ DHKQEEKITN 120 EENPHKNIAT SRSNDNCQET AADQTAAAGE VTVALHIGLP SSSAAAAASA GSGGSGHDHH 180 QQEAAGEGAR ISGREMQEEE EEKEGGDQEG EEEETMTTLP LGCASIGIGK LNKGQYWIPT 240 PSQILIGPTQ FSCPVCYKTF NRYNNMQMHM WGHGSQYRKG PESLRGTQPT AMLRLPCYCC 300 AAGCRNNIDH PRARPLKDFR TLQTHYKRKH GIKPFMCRKC GKAFAVRGDW RTHEKNCGKL 360 WYCACGSDFK HKRSLKDHIR AFGRGHSACG IDSFDADELD DEPSSDLDHG TSGGAS

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MLSPSSPTFS SNPSISSSSS SSSMGDPYTN FLRGYHRSHP LHFPPPPPPP PYAASSSSFS  60
GLFSSYLHHP PPPPPSSPPI REALPLLSLT PSNTHLIPSH QLDDLRRHDQ DHKQEEKITN  120
EENPHKNIAT SRSNDNCQET AADQTAAAGE VTVALHIGLP SSSAAAAASA GSGGSGHDHH  180
QQEAAGEGAR ISGREMQEEE EEKEGGDQEG EEEETMTTLP LGCASIGIGK LNKGQYWIPT  240
PSQILIGPTQ FSCPVCYKTF NRYNNMQMHM WGHGSQYRKG PESLRGTQPT AMLRLPCYCC  300
AAGCRNNIDH PRARPLKDFR TLQTHYKRKH GIKPFMCRKC GKAFAVRGDW RTHEKNCGKL  360
WYCACGSDFK HKRSLKDHIR AFGRGHSACG IDSFDADELD DEPSSDLDHG TSGGAS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR06G17470.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071104	0.0	AK071104.1 Oryza sativa Japonica Group cDNA clone:J023078D20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015693889.1	1e-175	PREDICTED: LOW QUALITY PROTEIN: zinc finger protein WIP2
Swissprot	Q9SVY1	1e-130	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0D9WS35	0.0	A0A0D9WS35_9ORYZ; Uncharacterized protein
STRING	LPERR06G17470.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-117	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]