PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G15630.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 486aa    MW: 51333.6 Da    PI: 8.5705
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G15630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.2e-12288333454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h + ErrRR+riN++f+ Lr llP+       K +Ka++L  ++ Y+ +L
  LPERR06G15630.1 288 HHVISERRRRERINDSFQSLRALLPPG-----SKKDKAAVLASTTAYMDKL 333
                      58899********************95.....599************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.135284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-16286352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16288352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-10289333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-13290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-4299338No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MARAAARVPG CVYLCLWAPA AVAGIPPSHL FCLDAWIGGG GGGRALELFD AYRGALCAAV  60
SGCVPGWAYK DGAACLALPE PDLAASASLQ LQQLFYQESG TKMAVFMGCE SGEIEVGLSS  120
TSSTTPAAVA NEMQQSILEE LLQMPPSSPS SSLLSMSVGS PEYSSLVRSM ATPVAAAVEP  180
TPVNDDDAVI AQAMLAVISA PPPPPPLFPP RRRRAHSSPS RRPTAFKAYN AALSPRRRRH  240
PAAPMGQRMI KRGISLLFAL HTETRRRELA AAAAPPPPPM PTSSSQLHHV ISERRRRERI  300
NDSFQSLRAL LPPGSKKDKA AVLASTTAYM DKLMSQVSEL EEKNRQLEAQ LARRSGDPRH  360
DTIVGESSSS SSERIQVDVA IAGSSTSSST TSDRPPREVG IRVTVRAECH VSEVVVALLT  420
RLREMGRFTV VSVDARQGSS SLAQVSLTLH ATAGDVSDET SLKEAMAKAV GDVVTPPPVA  480
PPGASP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292297ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G15630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882299.11e-164putative transcription factor bHLH041
TrEMBLA0A0D9WRD30.0A0A0D9WRD3_9ORYZ; Uncharacterized protein
STRINGLPERR06G15630.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-23bHLH family protein