PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G13810.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 1049aa    MW: 118670 Da    PI: 6.4597
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G13810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.9e-08182203526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      lC++++  G+Ck+G  CkF+H+
  LPERR06G13810.1 182 LCSYYMDRGFCKFGTGCKFHHP 203
                      8********************9 PP
2zf-CCCH25.52.3e-08634659126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++++ C ++ ++GtCk+G rC ++H+
  LPERR06G13810.1 634 PGQPDCTYYVKFGTCKFGMRCVYNHP 659
                      5789*********************9 PP
3zf-CCCH26.79.3e-09682708127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C+++ ++G Ck+G +C+F+H++
  LPERR06G13810.1 682 PGEPDCSHYGKFGSCKFGTSCRFNHPE 708
                      5789*********************96 PP
4zf-CCCH32.12e-10750775126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++t+lC+++   G+Ck+G +CkF+H+
  LPERR06G13810.1 750 PGTALCSYYINRGICKFGTNCKFHHP 775
                      68***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.3196189IPR000571Zinc finger, CCCH-type
SMARTSM003560.00326188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544110138IPR000571Zinc finger, CCCH-type
SMARTSM003560.69110137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.277177205IPR000571Zinc finger, CCCH-type
SMARTSM003560.0031177204IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5181205IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5182203IPR000571Zinc finger, CCCH-type
SuperFamilySSF483711.01E-30378540IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.40.1803.3E-32380539IPR016021MIF4G-like domain
SMARTSM005432.9E-7384611IPR003890MIF4G-like, type 3
PfamPF028541.6E-20384539IPR003890MIF4G-like, type 3
PROSITE profilePS5010313.76633661IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-4633660IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5635659IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.854681709IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016681708IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5683708IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178749777IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5749776IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6749777IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-7750775IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-5752775IPR000571Zinc finger, CCCH-type
PfamPF028541.3E-14872984IPR003890MIF4G-like, type 3
Gene3DG3DSA:1.25.40.1803.5E-19875983IPR016021MIF4G-like domain
SuperFamilySSF483712.33E-17876984IPR016024Armadillo-type fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1049 aa     Download sequence    Send to blast
MVEIIMSSVA SASSDSTATS PSPVDQLFLP AGWEWDDPWP AGDGETKPPP PPPEEEEHPR  60
RPGQPDCSYY VKFGSCKFGM MCIYNHPDRE HRLGFEAGGS GGDKLEHPLR PGQPDCYHYL  120
LFRRCKHGMS CRYNHPPPGG RMPQQTYCLG KAQQYNNHDG KSDVEKVKLN LHGLPLRPGL  180
GLCSYYMDRG FCKFGTGCKF HHPDQSSDQE INANQASSQV NIYSVLDLEE LNEQPVPSQE  240
IDQPRNSRLL PVERTCYTRD QLLQLRQTVD VPKDILELTQ HINVELAGED QSWLRNETIN  300
VQIASYKRFD ETDSREWRPR SVQTPLVKEG QSGDKICQTK HQYALCWNQE QLNNNDQVGP  360
ISCAKTEEPW SIRKGNPFDK DGVLKRVKGI LSILTPEKFD HLKGQLIEPG ITRADILKDV  420
INLILEKAVA EPTFCPMYAQ LCSYLNKNLK SFPREDPDGE ENTFKRALST KCLEIFESTS  480
NVRAEIYKLT GPDKEMERRD KEMLVKLQTL GNIRLVRALL TERLVTKKIV QHIVQAVMEC  540
DKFLFEPLGK VDLLNILFEG MTDSVSAGNE SNMGFNASGD KKCSMAANDV EIINKDVDRL  600
NEQATLPKSF KQNDNMWPAG GGETAVEEEH PRRPGQPDCT YYVKFGTCKF GMRCVYNHPD  660
RKYRLGFDAG GGDKLEQHPR RPGEPDCSHY GKFGSCKFGT SCRFNHPEYP GGDRTPQQMY  720
FPRKAYHHHH EGKTEVEQVE LNLLGFPLRP GTALCSYYIN RGICKFGTNC KFHHPADPGL  780
DQEKAVTSRH ANQESSQVNA YSVLDQGESD EQSDAPQEVH QKTGDSIQEA KVPALGWKQE  840
QFNRHGHDQR FQFDSEAQYT EHIDAREVRY SEKLDVIGLI LQKAITEPTF CKMYAQLCSY  900
LNENLTLFPP EDPGGEEITF KRALANRCQE TFESTCNLWA EIYRSGPDQE MDRRDKERLV  960
KLQTLGNMHL LKELIKQKLV TDKMFAGSKP QHMMTYGSLC TARPSARYAA LAGDHQLDGR  1020
TSSSGMVVSV STASKPTAAL EGWMPMSQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iul_A2e-1638154220185Eukaryotic translation initiation factor 4 gamma 2
4iul_B2e-1638154220185Eukaryotic translation initiation factor 4 gamma 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G13810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641846.10.0zinc finger CCCH domain-containing protein 42 isoform X1
SwissprotQ5Z5Q30.0C3H43_ORYSJ; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0D9WQS20.0A0A0D9WQS2_9ORYZ; Uncharacterized protein
STRINGLPERR06G13810.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143301322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.19e-33C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]