PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G13370.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CPP
Protein Properties Length: 471aa    MW: 51474.1 Da    PI: 7.05
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G13370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.54.1e-16137176140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgC+Ckks ClkkYCeCf+a+  Cs++C+C dCkN +
  LPERR06G13370.1 137 KHNKGCHCKKSGCLKKYCECFQANILCSKDCRCVDCKNFK 176
                      589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163424.68355177IPR005172CRC domain
SMARTSM011141.8E-18137178IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.6E-12140175IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MTEKQMDQQQ QPEQTAPAPT DEAKAPPPQP QPRPPPQPKP AASVQHTNWP IAIRPPKQPT  60
ETKSVPPAKK KKHSGDYCDG CHCKQCGNHA ENESVRQEAI NSTKQRNPTA FQPKIENCSN  120
TPNPRKDDAG GSASLRKHNK GCHCKKSGCL KKYCECFQAN ILCSKDCRCV DCKNFKGNEE  180
LQAITQAGNS SERNNIQHAA NVALNGAIGS SGYRYSPVRR KRPPEDPLFQ KLNGEGNMMQ  240
PQFQEANHVD SSEITSSIDL EGCYSNYQSR SKMVYRSPLA ETIGPEDATG LTTHLVILCR  300
KATGALLTTE NNMGMDVERG THTNSDGAIN MDQQNEGDFG SCSNTLEDPR PASPGTQALM  360
CDEQGSTFGT DYRSSFPVAF HDQDTSELNA LQEKAVLTGF RDYLRAVITR GKINEANWSS  420
EAAMELDTRR HNGSATILSP LKAVEKTEVP NGPENPKASP SASNCGSKDQ E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-189120148135Protein lin-54 homolog
5fd3_B4e-189120148135Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G13370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8362560.0CT836256.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111J17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656939.20.0PREDICTED: protein tesmin/TSO1-like CXC 7 isoform X2
TrEMBLA0A0D9WQL80.0A0A0D9WQL8_9ORYZ; Uncharacterized protein
STRINGLPERR06G13370.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.13e-70Tesmin/TSO1-like CXC domain-containing protein