PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

G2-like

Protein Properties

Length: 514aa MW: 55375 Da PI: 4.7939

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR06G12880.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.4	1.4e-27	179	233	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQkYR++ LPERR06G12880.1 179 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSH 233 6799***************.******************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.924	176	235	IPR017930	Myb domain
SuperFamily	SSF46689	1.67E-18	177	236	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.6E-27	177	236	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-26	179	233	IPR006447	Myb domain, plants
Pfam	PF00249	7.4E-8	182	231	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010638	Biological Process	positive regulation of organelle organization
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MLAVSPAMCP DVAEDRARVV AGDAVGMEVV GDMEFDFSVD DIDFGDFFLR LEDGDVLPDL 60 EAVDPAEIFT DFEAIATSGG EEFQEDQEVP TVELLAPVED VGVVDVVVGE EHREFVAEAA 120 GEEEKVGCNQ DDEAEEANAD VGGDAAVVAE AKSSSTTSSS QEAESRHKSS SKSSQGKKKA 180 KVDWTPELHR RFVQAVEQLG IDKAVPSRIL EIMGIDSLTR HNIASHLQKY RSHRKHMLAR 240 EAETASWTQR RQIYAAGGGA VAKRPESNVW AVPTIGFPPP PPLPPPPSPM QHFARPLHVW 300 GHPTVDSPRV PMWPPRHLVP RCPALPLVPP PPPSDPAFWH HPYMRGQAHM PTQGTPCMAM 360 PMPAARFPAP PVPGVVPCPM YRPLTPPALV SKNQQDAQLQ LQAQPGQAHM PTQGTPCMAM 420 PMPAARFPAP PVPGVVPCPM YRPLTPPALV SKNQQDAQLQ LQAQPSSESI DAAIGDVLTK 480 PWLPLPLGLK PPSLDSVMGE LQRQGVANVP PAGG

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MLAVSPAMCP DVAEDRARVV AGDAVGMEVV GDMEFDFSVD DIDFGDFFLR LEDGDVLPDL  60
EAVDPAEIFT DFEAIATSGG EEFQEDQEVP TVELLAPVED VGVVDVVVGE EHREFVAEAA  120
GEEEKVGCNQ DDEAEEANAD VGGDAAVVAE AKSSSTTSSS QEAESRHKSS SKSSQGKKKA  180
KVDWTPELHR RFVQAVEQLG IDKAVPSRIL EIMGIDSLTR HNIASHLQKY RSHRKHMLAR  240
EAETASWTQR RQIYAAGGGA VAKRPESNVW AVPTIGFPPP PPLPPPPSPM QHFARPLHVW  300
GHPTVDSPRV PMWPPRHLVP RCPALPLVPP PPPSDPAFWH HPYMRGQAHM PTQGTPCMAM  360
PMPAARFPAP PVPGVVPCPM YRPLTPPALV SKNQQDAQLQ LQAQPGQAHM PTQGTPCMAM  420
PMPAARFPAP PVPGVVPCPM YRPLTPPALV SKNQQDAQLQ LQAQPSSESI DAAIGDVLTK  480
PWLPLPLGLK PPSLDSVMGE LQRQGVANVP PAGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	1e-16	176	231	2	57	ARR10-B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269\|PubMed:19808806}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR06G12880.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:11340194}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644244.1	0.0	probable transcription factor GLK1
Swissprot	Q5Z5I4	0.0	GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBL	A0A0D9WQG0	0.0	A0A0D9WQG0_9ORYZ; Uncharacterized protein
STRING	LPERR06G12880.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2415	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	1e-46	GBF's pro-rich region-interacting factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang Y, et al. A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes. Plant Methods, 2011. 7(1): p. 30 [PMID:21961694]