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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G10640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C2H2 | ||||||||
Protein Properties | Length: 209aa MW: 23724.6 Da PI: 6.0072 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00035 | 64 | 86 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C++ Fs++ L H+ H LPERR06G10640.1 64 YMCKHCNEEFSTHQALGGHMAGH 86 89******************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.45E-7 | 61 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-4 | 62 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.596 | 64 | 91 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.0E-7 | 64 | 89 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 66 | 87 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MEQATVGAGA GELATGIMSG AEGSRLVLHD EREAQRKGKR KMKELRGAKS YEDGASRKEK 60 RRPYMCKHCN EEFSTHQALG GHMAGHHKEK RILKEKLLGR SLVLEEQPER SLNLKEKQPE 120 RGLILGEKQP ERIKVLKEKQ PERSLTLEEK QPEVYQDKID QIMNSQETTS NEGAAYLDGG 180 SNTEPNAEPE EDRRLPYDFD LNLEASEQE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G10640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642158.1 | 2e-63 | uncharacterized protein LOC107278701 | ||||
TrEMBL | A0A0D9WPM3 | 1e-149 | A0A0D9WPM3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G10640.1 | 1e-150 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13916 | 20 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01860.1 | 2e-06 | C2H2 family protein |