PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G09700.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YB
Protein Properties Length: 262aa    MW: 27237.6 Da    PI: 5.0621
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G09700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB158.69.7e-5033127195
            NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      vreqdr++Pianv+rim++vlP +akis+dake++qecvsefisfvt+ea+d+c+re+rkt++++dl+wa+  lGf+dyv pl vyl++ re e
  LPERR06G09700.1  33 VREQDRLMPIANVVRIMRRVLPPHAKISDDAKEVIQECVSEFISFVTGEANDRCHREHRKTVTAEDLVWAMDRLGFDDYVTPLAVYLRRMRESE 126
                      69******************************************************************************************99 PP

            NF-YB  95 g 95 
                      g
  LPERR06G09700.1 127 G 127
                      7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.2E-4529128IPR009072Histone-fold
SuperFamilySSF471139.78E-3636138IPR009072Histone-fold
PfamPF008082.2E-2440103IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.9E-136785No hitNo description
PROSITE patternPS0068507086IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.9E-1386104No hitNo description
PRINTSPR006153.9E-13105123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEPAFPNGVA AAPPPVAMAA PAVAAEQPAT VTVREQDRLM PIANVVRIMR RVLPPHAKIS  60
DDAKEVIQEC VSEFISFVTG EANDRCHREH RKTVTAEDLV WAMDRLGFDD YVTPLAVYLR  120
RMRESEGGGS DVRGGSGDRV AVSPPPPPQL QDDVFFRYVQ APPQPVYAPQ PVYAPPPPAD  180
QLVPGYPAAV PVLQAGGGAP HVHVGVGGGG QHEVFGGLAA PTGMYYGGGG APFGEGSSHG  240
GCAAEGSSST NASPAAVGPT YQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A2e-5231124497NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G09700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880351e-115AB288035.1 Oryza sativa Japonica Group OsHAP3D mRNA for HAP3 subunit of HAP complex, complete cds.
GenBankAK1096601e-115AK109660.1 Oryza sativa Japonica Group cDNA clone:002-141-E08, full insert sequence.
GenBankAP0047911e-115AP004791.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0491D10.
GenBankAP0149621e-115AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAY0621831e-115AY062183.1 Oryza sativa HAP3 transcriptional-activator (LEC1A) mRNA, complete cds.
GenBankCP0126141e-115CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642670.12e-80nuclear transcription factor Y subunit B-10-like
TrEMBLA0A0D9WPB20.0A0A0D9WPB2_9ORYZ; Uncharacterized protein
STRINGLPERR06G09700.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.21e-50nuclear factor Y, subunit B6