PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G07270.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family M-type_MADS
Protein Properties Length: 411aa    MW: 45431.1 Da    PI: 4.9844
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G07270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.38.6e-28958150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien++nrqvtfskRrng++KKA+ELSvLCd+++a+++fs++g+l  +s
  LPERR06G07270.1  9 KRIENSTNRQVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSGRLSHFS 58
                     79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.0E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.758161IPR002100Transcription factor, MADS-box
CDDcd002655.30E-38278No hitNo description
SuperFamilySSF554551.06E-29286IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MGRVKLQIKR IENSTNRQVT FSKRRNGLIK KAYELSVLCD IDIALLMFSP SGRLSHFSGR  60
RRIEDVITRY INLPESDRGG IIHNREYLVK MLTQLKCESD ATEELTNTSS KAPVNSNIEE  120
LQQEIRTYQQ QVQLAEEQLR MFEPDSASLA SMENVEGCEK FISDMLRRVE ERKRYLLCSH  180
MGSFDVTAST SAMQHLYMPP QQQHGDIAGA VFGSDEVASW VSDGMAPGTS SVASMFAGPS  240
DSIMPFRDQA MYDSMHREAD VEAVGPGVQM CHVDQQGQGD DWNQYTPAEL FSAFIPSTPF  300
PLDEDVISIA PVLTSPPPMM TTIHDLPPWV RQRRRAARKH RRSTTTVACA HLTISCSGRD  360
IDSTGPDVTA ADDDHHPPSA AVGETAAAGC SQAPPVDDDG GLCAPDDLLL R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A5e-17175174MEF2 CHIMERA
6bz1_B5e-17175174MEF2 CHIMERA
6bz1_C5e-17175174MEF2 CHIMERA
6bz1_D5e-17175174MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G07270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693806.11e-180PREDICTED: agamous-like MADS-box protein AGL66 isoform X3
SwissprotQ1PFC21e-67AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLA0A0D9WNF60.0A0A0D9WNF6_9ORYZ; Uncharacterized protein
STRINGLPERR06G07270.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.15e-70AGAMOUS-like 66
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]