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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G06240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 658aa MW: 70864.3 Da PI: 6.2728 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.8 | 5.9e-21 | 16 | 71 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q+++Le++F+++++p++++r++L+++lgL+ rq+k+WFqNrR+++k LPERR06G06240.1 16 RKRYHRHTPRQIQQLEAMFKECPHPDENQRAQLSRELGLEPRQIKFWFQNRRTQMK 71 688899***********************************************998 PP | |||||||
2 | START | 46.8 | 8.5e-16 | 212 | 343 | 2 | 109 |
HHHHHHHHHHHHHHHC-TT-EEEE.........EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS START 2 laeeaaqelvkkalaeepgWvkss.........esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla... 77 +a +a++el+++a+a+e +W ks+ e++n d++ ++f++ ++ ++e +r+sg+v m ++ l ++d++ +W e ++ LPERR06G06240.1 212 MATRAMDELIRLAQAGEHVWAKSPggggagdtrEILNIDTYDSIFSKPGGsyrapnINVEGSRESGLVLMSAVALADVFMDTN-KWMEFFPsiv 304 57899****************************************887779**********************9999999999.********** PP .EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEE CS START 78 .kaetlevissg.....galqlmvaelqalsplvp.Rdf 109 ka t++v+ +g + l lm+ el ++p+vp R++ LPERR06G06240.1 305 sKAHTIDVLVNGmggrsESLILMYEELHIMTPAVPtREV 343 **************************************8 PP | |||||||
3 | START | 28.6 | 3.1e-10 | 343 | 386 | 164 | 206 |
EEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 vtwveh+++++++p l+r lv sg+a+ga +w+a+lqr ce+ LPERR06G06240.1 343 VTWVEHMEVEEKSPiNPLYRDLVLSGAAFGAHRWLAALQRGCER 386 9****************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.67E-20 | 9 | 76 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 10 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.204 | 13 | 73 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.8E-20 | 14 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.74E-20 | 15 | 74 | No hit | No description |
Pfam | PF00046 | 1.7E-18 | 16 | 71 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 48 | 71 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 18.698 | 202 | 343 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.75E-9 | 203 | 388 | No hit | No description |
CDD | cd08875 | 2.87E-69 | 206 | 385 | No hit | No description |
Pfam | PF01852 | 1.4E-9 | 212 | 343 | IPR002913 | START domain |
PROSITE profile | PS50848 | 12.597 | 344 | 389 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.87E-21 | 403 | 580 | No hit | No description |
SuperFamily | SSF55961 | 6.87E-21 | 608 | 647 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 658 aa Download sequence Send to blast |
MDFGDEPEGS DSQRRRKRYH RHTPRQIQQL EAMFKECPHP DENQRAQLSR ELGLEPRQIK 60 FWFQNRRTQM KAQHERADNC FLRAENDKIR CENIAIREAL KNVICPTCGG PPVGEDYFDE 120 QKLRMENARL KEELDRVSNL TSKYLGRPFT QLPPATPMSV SSLDLSVGGM SGPAGLGGPS 180 LDLDLLSGGS SGIPFQLPAP VSDMERPMMA EMATRAMDEL IRLAQAGEHV WAKSPGGGGA 240 GDTREILNID TYDSIFSKPG GSYRAPNINV EGSRESGLVL MSAVALADVF MDTNKWMEFF 300 PSIVSKAHTI DVLVNGMGGR SESLILMYEE LHIMTPAVPT REVTWVEHME VEEKSPINPL 360 YRDLVLSGAA FGAHRWLAAL QRGCERYASL VALAVPHHIA GVTPEGKRSM MKLSQRMVSS 420 FCSSLGASQM HQWTTLSGSN EVSVRVTMHR STDPGQPNGV VLSAATSIWL PVPCDHVFAF 480 VRDENTRSQW DVLSHGNQVQ EVSRIPNGSN PGNCISLLRG LNASQNSMLI LQESCTDASG 540 SLVVYSPIDI PAANVVMSGE DPSSIPLLPS GFTILPDGRP GSAAGASTSS AAAGGGGGAL 600 AGGAARGGSV VTVAFQILVS SLPSSKLNAE SVATVNGLIT TTVEQIKAAL NCSGHGHP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G06240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642098.1 | 0.0 | homeobox-leucine zipper protein ROC8 | ||||
Swissprot | Q69T58 | 0.0 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | A0A0D9WN36 | 0.0 | A0A0D9WN36_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G06240.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2912 | 37 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |