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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G05750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 190aa MW: 20675.7 Da PI: 4.5296 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.2 | 1.3e-15 | 12 | 61 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr + +g+W+AeIr p++ r+r++lg+++ +e+Aa+a +aa +l+g LPERR06G05750.1 12 RYKGVRLRQ-WGKWAAEIRLPNS---RRRIWLGSYDAPEKAARAFDAAFVCLRG 61 7*****998.**********933...5*********************988886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.614 | 12 | 71 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-26 | 12 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-18 | 12 | 73 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.5E-30 | 12 | 77 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.7E-9 | 12 | 55 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.75E-23 | 12 | 73 | No hit | No description |
PRINTS | PR00367 | 2.3E-8 | 13 | 24 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-8 | 35 | 51 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MASGGAAEAE RRYKGVRLRQ WGKWAAEIRL PNSRRRIWLG SYDAPEKAAR AFDAAFVCLR 60 GVEAKSGLNF PDSPPDVART GDLREVYAAA VSHANRPPAA APVAAEEQHD VVRGNRPPAP 120 LQVEGGSFDW SQFRENPPPI YSPTATAIAG NDAYEQAAMW TTTAARVEES IGDDDDDEGS 180 ECQDLWSFDA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G05750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 2e-61 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882388.1 | 1e-59 | ethylene-responsive transcription factor ERF018-like | ||||
TrEMBL | A0A0D9WMX9 | 1e-135 | A0A0D9WMX9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G05750.1 | 1e-135 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 2e-32 | ERF family protein |