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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G05740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 163aa MW: 17697.6 Da PI: 7.4123 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.9 | 5.8e-09 | 14 | 53 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g r+r++lg+++ +e+Aa+a +aa +l+g LPERR06G05740.1 14 KYRGVRMRK-WGN-------------RRRIWLGSYDAPEKAARAFDAAFVCLRG 53 89***9998.666.............5*********************999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-13 | 14 | 65 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.434 | 14 | 63 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-17 | 14 | 69 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.63E-18 | 14 | 65 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-12 | 14 | 65 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MSSSSSAPAP ERNKYRGVRM RKWGNRRRIW LGSYDAPEKA ARAFDAAFVC LRGAEAKSGL 60 NFPDSPPVFA RTSDPQEVYE AAVSHANFRP PPSTAIAPPV ITGGNVAAPP PVQLPAGSGC 120 FDWSQNSNNP LYSPAARYGL PTMWKEDDDD HQGASDSLWS FND |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G05740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642230.1 | 2e-38 | ethylene-responsive transcription factor ERF039 | ||||
Refseq | XP_025882167.1 | 2e-38 | ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q84QC2 | 1e-21 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A0D9WMX8 | 1e-115 | A0A0D9WMX8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G05740.1 | 1e-116 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 5e-24 | ERF family protein |
Publications ? help Back to Top | |||
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