PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G05570.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 498aa MW: 53349.8 Da PI: 6.0892 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.2 | 1.1e-11 | 348 | 393 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L++l+P++ K +Ka++L + ++Y+k Lq LPERR06G05570.4 348 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 393 99***********************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.19E-17 | 341 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.41E-13 | 341 | 397 | No hit | No description |
PROSITE profile | PS50888 | 17.25 | 343 | 392 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.1E-17 | 345 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.2E-9 | 348 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-14 | 349 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MVLRYFRPSP FFVYPSLSRA SMDYSAGSYV WPHNSGSENY GFGDGSSESY AQEGSLPPSG 60 YFVGSGSDRS LKTTENEKNP AMLANGCLPY NTQAHPLSGQ ILSKDGLHSN LLDLQQLQNN 120 SNLQGNSFPP GVLQCNSTSG TFDAKLDTPG LAELPHALSS SIDSNGSDIS AFLADVHAVS 180 SAPTLCSAFQ NIPSFMEPVN LEAFGFQGSQ NTAMLNKTSH PNGNPLLFDN AAMASLHDSK 240 EFINGASISS FGTVLQALGA GGLKAQQQKQ NVRDIPLPTF TSGNHLAVTD AQVPPLPSKI 300 LPLLHDHKSE YPINRSSDVE PQANSAPGNS ASVKPRTRAR RGQATDPHSI AERLRREKIS 360 ERMKNLQDLV PNSNKADKAS MLDEIIDYVK FLQLQVKVLS MSRLGAPGAV LPLLRESQTE 420 CHSNPSLSAS TISQGLPDMP DSEDSSAFEQ EVVKLMETSI TSAMQYLQNK GLCLMPIALA 480 SAISNQKGMA VAAIPPEK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G05570.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT832907 | 0.0 | CT832907.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA242A24, full insert sequence. | |||
GenBank | CT832908 | 0.0 | CT832908.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244I16, full insert sequence. | |||
GenBank | CT832909 | 0.0 | CT832909.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI213M20, full insert sequence. | |||
GenBank | CT832910 | 0.0 | CT832910.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI236P22, full insert sequence. | |||
GenBank | CT832911 | 0.0 | CT832911.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI245F02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644031.1 | 0.0 | transcription factor SPATULA isoform X1 | ||||
Refseq | XP_025882097.1 | 0.0 | transcription factor SPATULA isoform X1 | ||||
TrEMBL | A0A0D9WMV4 | 0.0 | A0A0D9WMV4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G05570.1 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58010.1 | 7e-57 | LJRHL1-like 3 |