PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G05570.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 498aa    MW: 53349.8 Da    PI: 6.0892
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G05570.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11348393555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  LPERR06G05570.4 348 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 393
                      99***********************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-17341403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.41E-13341397No hitNo description
PROSITE profilePS5088817.25343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-17345402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-9348393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-14349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MVLRYFRPSP FFVYPSLSRA SMDYSAGSYV WPHNSGSENY GFGDGSSESY AQEGSLPPSG  60
YFVGSGSDRS LKTTENEKNP AMLANGCLPY NTQAHPLSGQ ILSKDGLHSN LLDLQQLQNN  120
SNLQGNSFPP GVLQCNSTSG TFDAKLDTPG LAELPHALSS SIDSNGSDIS AFLADVHAVS  180
SAPTLCSAFQ NIPSFMEPVN LEAFGFQGSQ NTAMLNKTSH PNGNPLLFDN AAMASLHDSK  240
EFINGASISS FGTVLQALGA GGLKAQQQKQ NVRDIPLPTF TSGNHLAVTD AQVPPLPSKI  300
LPLLHDHKSE YPINRSSDVE PQANSAPGNS ASVKPRTRAR RGQATDPHSI AERLRREKIS  360
ERMKNLQDLV PNSNKADKAS MLDEIIDYVK FLQLQVKVLS MSRLGAPGAV LPLLRESQTE  420
CHSNPSLSAS TISQGLPDMP DSEDSSAFEQ EVVKLMETSI TSAMQYLQNK GLCLMPIALA  480
SAISNQKGMA VAAIPPEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G05570.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8329070.0CT832907.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA242A24, full insert sequence.
GenBankCT8329080.0CT832908.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244I16, full insert sequence.
GenBankCT8329090.0CT832909.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI213M20, full insert sequence.
GenBankCT8329100.0CT832910.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI236P22, full insert sequence.
GenBankCT8329110.0CT832911.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI245F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644031.10.0transcription factor SPATULA isoform X1
RefseqXP_025882097.10.0transcription factor SPATULA isoform X1
TrEMBLA0A0D9WMV40.0A0A0D9WMV4_9ORYZ; Uncharacterized protein
STRINGLPERR06G05570.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.17e-57LJRHL1-like 3