PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G05570.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 499aa MW: 53303.6 Da PI: 5.5849 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.2 | 1.1e-11 | 349 | 394 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L++l+P++ K +Ka++L + ++Y+k Lq LPERR06G05570.3 349 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 394 99***********************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.19E-17 | 342 | 404 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.43E-13 | 342 | 398 | No hit | No description |
PROSITE profile | PS50888 | 17.25 | 344 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.2E-17 | 346 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.2E-9 | 349 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-14 | 350 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MDNRVGSLAN VKVEEERTLR ASMDYSAGSY VWPHNSGSEN YGFGDGSSES YAQEGSLPPS 60 GYFVGSGSDR SLKTTENEKN PAMLANGCLP YNTQAHPLSG QILSKDGLHS NLLDLQQLQN 120 NSNLQGNSFP PGVLQCNSTS GTFDAKLDTP GLAELPHALS SSIDSNGSDI SAFLADVHAV 180 SSAPTLCSAF QNIPSFMEPV NLEAFGFQGS QNTAMLNKTS HPNGNPLLFD NAAMASLHDS 240 KEFINGASIS SFGTVLQALG AGGLKAQQQK QNVRDIPLPT FTSGNHLAVT DAQVPPLPSK 300 ILPLLHDHKS EYPINRSSDV EPQANSAPGN SASVKPRTRA RRGQATDPHS IAERLRREKI 360 SERMKNLQDL VPNSNKADKA SMLDEIIDYV KFLQLQVKVL SMSRLGAPGA VLPLLRESQT 420 ECHSNPSLSA STISQGLPDM PDSEDSSAFE QEVVKLMETS ITSAMQYLQN KGLCLMPIAL 480 ASAISNQKGM AVAAIPPEK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G05570.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT832907 | 0.0 | CT832907.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA242A24, full insert sequence. | |||
GenBank | CT832908 | 0.0 | CT832908.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244I16, full insert sequence. | |||
GenBank | CT832909 | 0.0 | CT832909.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI213M20, full insert sequence. | |||
GenBank | CT832910 | 0.0 | CT832910.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI236P22, full insert sequence. | |||
GenBank | CT832911 | 0.0 | CT832911.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI245F02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644031.1 | 0.0 | transcription factor SPATULA isoform X1 | ||||
Refseq | XP_025882097.1 | 0.0 | transcription factor SPATULA isoform X1 | ||||
TrEMBL | A0A0D9WMV3 | 0.0 | A0A0D9WMV3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G05570.1 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58010.1 | 2e-56 | LJRHL1-like 3 |