PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G05570.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 499aa    MW: 53303.6 Da    PI: 5.5849
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G05570.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11349394555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  LPERR06G05570.3 349 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 394
                      99***********************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-17342404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.43E-13342398No hitNo description
PROSITE profilePS5088817.25344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-17346403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-9349394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-14350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MDNRVGSLAN VKVEEERTLR ASMDYSAGSY VWPHNSGSEN YGFGDGSSES YAQEGSLPPS  60
GYFVGSGSDR SLKTTENEKN PAMLANGCLP YNTQAHPLSG QILSKDGLHS NLLDLQQLQN  120
NSNLQGNSFP PGVLQCNSTS GTFDAKLDTP GLAELPHALS SSIDSNGSDI SAFLADVHAV  180
SSAPTLCSAF QNIPSFMEPV NLEAFGFQGS QNTAMLNKTS HPNGNPLLFD NAAMASLHDS  240
KEFINGASIS SFGTVLQALG AGGLKAQQQK QNVRDIPLPT FTSGNHLAVT DAQVPPLPSK  300
ILPLLHDHKS EYPINRSSDV EPQANSAPGN SASVKPRTRA RRGQATDPHS IAERLRREKI  360
SERMKNLQDL VPNSNKADKA SMLDEIIDYV KFLQLQVKVL SMSRLGAPGA VLPLLRESQT  420
ECHSNPSLSA STISQGLPDM PDSEDSSAFE QEVVKLMETS ITSAMQYLQN KGLCLMPIAL  480
ASAISNQKGM AVAAIPPEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G05570.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8329070.0CT832907.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA242A24, full insert sequence.
GenBankCT8329080.0CT832908.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244I16, full insert sequence.
GenBankCT8329090.0CT832909.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI213M20, full insert sequence.
GenBankCT8329100.0CT832910.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI236P22, full insert sequence.
GenBankCT8329110.0CT832911.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI245F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644031.10.0transcription factor SPATULA isoform X1
RefseqXP_025882097.10.0transcription factor SPATULA isoform X1
TrEMBLA0A0D9WMV30.0A0A0D9WMV3_9ORYZ; Uncharacterized protein
STRINGLPERR06G05570.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-56LJRHL1-like 3