PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G05570.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 565aa    MW: 60835.7 Da    PI: 7.2029
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G05570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11415460555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  LPERR06G05570.1 415 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 460
                      99***********************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.97E-13408464No hitNo description
SuperFamilySSF474594.97E-17408470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.25410459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-17412469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-9415460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-14416465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MIMRTTPLGW LCISSSQSNA SSVLTLGKKA PFFLSSPLLS PHTRLFLFFL LTPLLLFPLR  60
LPRSNLRLLR YRHQPPQDSG AWVNKRASMD YSAGSYVWPH NSGSENYGFG DGSSESYAQE  120
GSLPPSGYFV GSGSDRSLKT TENEKNPAML ANGCLPYNTQ AHPLSGQILS KDGLHSNLLD  180
LQQLQNNSNL QGNSFPPGVL QCNSTSGTFD AKLDTPGLAE LPHALSSSID SNGSDISAFL  240
ADVHAVSSAP TLCSAFQNIP SFMEPVNLEA FGFQGSQNTA MLNKTSHPNG NPLLFDNAAM  300
ASLHDSKEFI NGASISSFGT VLQALGAGGL KAQQQKQNVR DIPLPTFTSG NHLAVTDAQV  360
PPLPSKILPL LHDHKSEYPI NRSSDVEPQA NSAPGNSASV KPRTRARRGQ ATDPHSIAER  420
LRREKISERM KNLQDLVPNS NKADKASMLD EIIDYVKFLQ LQVKVLSMSR LGAPGAVLPL  480
LRESQTECHS NPSLSASTIS QGLPDMPDSE DSSAFEQEVV KLMETSITSA MQYLQNKGLC  540
LMPIALASAI SNQKGMAVAA IPPEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G05570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8329070.0CT832907.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA242A24, full insert sequence.
GenBankCT8329080.0CT832908.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244I16, full insert sequence.
GenBankCT8329090.0CT832909.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI213M20, full insert sequence.
GenBankCT8329100.0CT832910.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI236P22, full insert sequence.
GenBankCT8329110.0CT832911.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI245F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644031.10.0transcription factor SPATULA isoform X1
RefseqXP_025882097.10.0transcription factor SPATULA isoform X1
TrEMBLA0A0D9WMV10.0A0A0D9WMV1_9ORYZ; Uncharacterized protein
STRINGLPERR06G05570.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.13e-56LJRHL1-like 3