PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G05570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 565aa MW: 60835.7 Da PI: 7.2029 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36 | 1.3e-11 | 415 | 460 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L++l+P++ K +Ka++L + ++Y+k Lq LPERR06G05570.1 415 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 460 99***********************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.97E-13 | 408 | 464 | No hit | No description |
SuperFamily | SSF47459 | 4.97E-17 | 408 | 470 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.25 | 410 | 459 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.7E-17 | 412 | 469 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.7E-9 | 415 | 460 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-14 | 416 | 465 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MIMRTTPLGW LCISSSQSNA SSVLTLGKKA PFFLSSPLLS PHTRLFLFFL LTPLLLFPLR 60 LPRSNLRLLR YRHQPPQDSG AWVNKRASMD YSAGSYVWPH NSGSENYGFG DGSSESYAQE 120 GSLPPSGYFV GSGSDRSLKT TENEKNPAML ANGCLPYNTQ AHPLSGQILS KDGLHSNLLD 180 LQQLQNNSNL QGNSFPPGVL QCNSTSGTFD AKLDTPGLAE LPHALSSSID SNGSDISAFL 240 ADVHAVSSAP TLCSAFQNIP SFMEPVNLEA FGFQGSQNTA MLNKTSHPNG NPLLFDNAAM 300 ASLHDSKEFI NGASISSFGT VLQALGAGGL KAQQQKQNVR DIPLPTFTSG NHLAVTDAQV 360 PPLPSKILPL LHDHKSEYPI NRSSDVEPQA NSAPGNSASV KPRTRARRGQ ATDPHSIAER 420 LRREKISERM KNLQDLVPNS NKADKASMLD EIIDYVKFLQ LQVKVLSMSR LGAPGAVLPL 480 LRESQTECHS NPSLSASTIS QGLPDMPDSE DSSAFEQEVV KLMETSITSA MQYLQNKGLC 540 LMPIALASAI SNQKGMAVAA IPPEK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G05570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT832907 | 0.0 | CT832907.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA242A24, full insert sequence. | |||
GenBank | CT832908 | 0.0 | CT832908.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244I16, full insert sequence. | |||
GenBank | CT832909 | 0.0 | CT832909.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI213M20, full insert sequence. | |||
GenBank | CT832910 | 0.0 | CT832910.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI236P22, full insert sequence. | |||
GenBank | CT832911 | 0.0 | CT832911.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI245F02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644031.1 | 0.0 | transcription factor SPATULA isoform X1 | ||||
Refseq | XP_025882097.1 | 0.0 | transcription factor SPATULA isoform X1 | ||||
TrEMBL | A0A0D9WMV1 | 0.0 | A0A0D9WMV1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G05570.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3254 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58010.1 | 3e-56 | LJRHL1-like 3 |