PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G04370.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 404aa    MW: 44465.7 Da    PI: 4.7792
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G04370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.62.1e-11166209447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WTt+E++ ++++vk +G g+Wk I++ +   +t  q+ s+ qk+
  LPERR06G04370.1 166 WTTDEHKMFLRGVKYYGRGDWKNISKFFVPSKTSVQVSSHAQKF 209
                      *****************************9************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.051157214IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-9162211IPR009057Homeodomain-like
SMARTSM007171.5E-8162212IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-15163215IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-13164212IPR006447Myb domain, plants
PfamPF002491.0E-7166208IPR001005SANT/Myb domain
CDDcd001671.12E-8166210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDPMFSGMEW TAVEEGEARS AVSRLNNHVD VVGAGNGNND TRHDRIVREL EALFPWMTKN  60
QVIDSYVDTV VDMMTVPTLP YNVGVVTHKN SEHMKDNFGM LPREDPMNSV DLSMNNYNSM  120
VFGDASMGDT VEQASPMPMV VNGNNVVNQG SSCQLAAPNI GKSRFWTTDE HKMFLRGVKY  180
YGRGDWKNIS KFFVPSKTSV QVSSHAQKFF RRLERIDKKQ RYSINDVGLN DAELENPLDN  240
NNYGGWQALA FAGGHLQPTG GYGTVGRAAP PAKSTSSVVA MNNVAQFWAP LLYNSRTQQH  300
FTQMQMLPQQ AWNDQQMMGT APLAPMEGAA AWNAAPIDGG AEWKNQQMMG AAAAPMEGAA  360
DNFAPAGGAV DNFVPADGEG YYQQEQGGGY DVPSEPWMMN NNMF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G04370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693466.12e-91PREDICTED: uncharacterized protein LOC107304324
TrEMBLA0A0D9WMF50.0A0A0D9WMF5_9ORYZ; Uncharacterized protein
STRINGLPERR06G04370.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.18e-19Homeodomain-like transcriptional regulator