PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G03990.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 452aa    MW: 50294.7 Da    PI: 7.98
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G03990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.9e-07159182123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y+C  Cg++F+++ +L rH r+ H
  LPERR06G03990.1 159 YSCAVCGRRFPTRPDLARHFRNlH 182
                      99******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.9E-4158185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.98E-5158185No hitNo description
SMARTSM003553.4E-4159182IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.131159187IPR007087Zinc finger, C2H2
PROSITE patternPS000280161182IPR007087Zinc finger, C2H2
CDDcd061671.50E-10178309No hitNo description
Gene3DG3DSA:3.40.50.10102.0E-4224298IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MAPPPLLPFL HLAANPNPLH HRAHNPHHLL HLHRRFSLRT IHPSRHATAA AAAKDPSLSP  60
PLADVEMVRG KDGVWTARPP TVVVLWDLDN KPPRGPPFPA AAALRDAASL LGRVVSVSAF  120
ANRHAFSHVP SWVADERRER RAMDRAERAG TAAAPPVPYS CAVCGRRFPT RPDLARHFRN  180
LHQRERNKKL NRLRSLKGKK RQKFRKRFIS GNTKYDDAAR ELITPKVGYG LASELRRAGV  240
NVRTVSDKPQ AADHALKRQV KHSVACGVDW LVLVSDDSDF TDTVRKARAA DLRTVVVGDG  300
CRALGSVADI WLPWNRVENG EVDEEMLRSG RHMGFRDEDM GFRDEDEQDD EFVVDWDTSD  360
LDGVVDDIVA TRTKLFSATT MSAFADEEIM DDLLGVGING GDMLWSSDED EDGLAVQCHS  420
AHATVTFQLI SRNKQQYEHA CGGKEVEDSK ST
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G03990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0234820.0AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03.
GenBankAP0025360.0AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641376.20.0uncharacterized protein LOC4340243
TrEMBLA0A0D9WMA60.0A0A0D9WMA6_9ORYZ; Uncharacterized protein
STRINGLPERR06G03990.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-81C2H2-like zinc finger protein