PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G02700.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 710aa    MW: 76172 Da    PI: 8.5101
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G02700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.5e-30368427159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  LPERR06G02700.1 368 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHP 427
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-31353427IPR003657WRKY domain
SuperFamilySSF1182903.66E-27361428IPR003657WRKY domain
PROSITE profilePS5081128.311363429IPR003657WRKY domain
SMARTSM007743.4E-37368428IPR003657WRKY domain
PfamPF031063.5E-27369427IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MAAPPLRRRR RPSPSPSSLY EQVSLLVPPM AERHPLESRG TQGLTDDRGN QIGPYRGEYR  60
IFDLTKTGTK GRREGAEGRN LRRGEGLCCS KQLASLYMEM IKQEKQFVAH EERLKDEVIK  120
DDGQISDGNF FKSLQNISIR KEELCSPSPT ERLCMDSSSR QTSINLKAQN KVLGQDDKFA  180
STRAEMGEVR EENERLKTLL SRISQDYRSL QMHFHDVLQQ EQPKKLPDSP TAIPADIEEP  240
EFVSLRLGTS TSKRKKEDKS TTGEVKGSGC TEDFLKIKGG LSLGLSDCRV GANNSDKMQP  300
DVMTLSPEGS FEDAKDDTIE TTEQWPPSKM LKNLRSPGTE VEDDDMAPQP QVKKARVSVR  360
ARCDAPTMND GCQWRKYGQK IAKGNPCPRA YYRCTVAAGC PVRKQVQRCA DDMSILITTY  420
EGTHNHPLSV SATAMASTTS AAASMLLSTS STSSLAAYHH PHHHYPSSSS SSSVAVSNGR  480
PFFLPPAAAS ITSTPSYPTI TLDLTSPSPA TTNAAFSLTG SNRFSSTFTT PHAGGARLYP  540
PTGGFTFSGS GAAANNPWTT PGYLSYGGSS LPAAHPPYKS SPPSSSSSFY QIQQQQKSAA  600
AAAPASAITD TIAKAITADS SFHTALAAAI TSYVGTTAAT TPATEDNGKV ELNLGLGMGH  660
SPPSMTSSAA SAVQSSSSRM FLQPSPSLGI SGSTASASST SPVANREQAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-203684281776Probable WRKY transcription factor 4
2lex_A7e-203684281776Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1511LRRRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G02700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643468.10.0probable WRKY transcription factor 72 isoform X1
TrEMBLA0A0D9WLR70.0A0A0D9WLR7_9ORYZ; Uncharacterized protein
STRINGLPERR06G02700.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.14e-64WRKY DNA-binding protein 72