PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HD-ZIP

Protein Properties

Length: 255aa MW: 26959.5 Da PI: 9.4327

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR06G02270.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.6e-19	79	133	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee+F+++++++ +++ L+++lgL rqV vWFqNrRa+ k LPERR06G02270.1 79 RKKLRLSKDQAAVLEECFRMHHTLTPKQKLALSNRLGLRPRQVEVWFQNRRARTK 133 788899***********************************************98 PP
2	HD-ZIP_I/II	121.8	3.5e-39	79	169	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LEe+F+++++L+p++K +l+++Lgl+prqv+vWFqnrRARtk+kq+E+dye+Lkr++++l+ en+rLe+ev+eLr +lk LPERR06G02270.1 79 RKKLRLSKDQAAVLEECFRMHHTLTPKQKLALSNRLGLRPRQVEVWFQNRRARTKLKQTEVDYEHLKRWCEQLAGENRRLEREVAELR-ALK 169 69*************************************************************************************9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.4E-18	63	129	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.44E-18	64	136	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.422	75	135	IPR001356	Homeobox domain
SMART	SM00389	1.1E-15	77	139	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-16	79	133	IPR001356	Homeobox domain
CDD	cd00086	8.86E-16	79	136	No hit	No description
PROSITE pattern	PS00027	0	110	133	IPR017970	Homeobox, conserved site
Pfam	PF02183	2.0E-10	135	169	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	6.2E-19	135	178	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MERQSLDLGL SLGFCFNSGG IATPVPAMEQ KEVSRAAAAA AAEDDMITCS PGSPVSSGSG 60 KRSSSGDEVD DDGAGAAARK KLRLSKDQAA VLEECFRMHH TLTPKQKLAL SNRLGLRPRQ 120 VEVWFQNRRA RTKLKQTEVD YEHLKRWCEQ LAGENRRLER EVAELRALKS SAATTPAAPP 180 LTTLTMCFSC NRVATSSSTA PNVAGVTTSP AAVAMFPGHH PQFLCGFRDG TGAAAAAAVY 240 GGGSSGLAKA VRAAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	135	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR06G02270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812705.1	6e-76	homeobox-leucine zipper protein HOX28-like
Swissprot	A2Y931	1e-74	HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
Swissprot	Q5VPE5	1e-74	HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBL	A0A0D9WLL7	0.0	A0A0D9WLL7_9ORYZ; Uncharacterized protein
STRING	LPERR06G02270.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3842	33	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17460.1	1e-28	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]