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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G01410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | GRAS | ||||||||
Protein Properties | Length: 612aa MW: 65335.9 Da PI: 6.2136 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 349.8 | 4.2e-107 | 211 | 590 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPi 90 lv++L++cAe +++g++ +a+ +Larl e+asp+g +pm+R+aayfteALa r++r++++l++ pp++ ++ ++ ++al++++ ++Pi LPERR06G01410.1 211 LVRALTACAESLAAGNHDAANYYLARLGETASPAGpTPMHRVAAYFTEALAIRVVRTWPHLFDVTPPRHLTDIVadgGEDDATALRILNAITPI 304 6899****************************************************************99976678899999************ PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv.pfefnvlva 183 ++f h+t N+ +l+a++g++rvH+iDfdi+qG+QWp +lq+LasR+ +p ++RiTgvg+ s++el+etg rLa++A+++g+ fef++ v+ LPERR06G01410.1 305 PRFIHFTLNERLLRAFDGHDRVHVIDFDIKQGIQWPGFLQSLASRDPPPSHVRITGVGE----SRQELNETGARLARVAAAVGLaAFEFHA-VV 393 ***********************************************************....9*******************945*****.7* PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklp 276 +rled++l++L+vk+gE +aVn vl+ hrll+ + + + ++L l +s+ + ++ + e+e d ++++ +rf+ a++ y+a+fd++ +a++ LPERR06G01410.1 394 DRLEDVRLWMLHVKRGERVAVNAVLAAHRLLRYD--TGAALADFLALTRSTGAAILLLGEHEGDD-GGRWEARFAAAMRRYAAVFDAVgAAGME 484 *******************************544..4445599********************98.789*******************999*** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerlee....aGFkpvplsekaakqaklllrkvksdg...yrve..eesgslvlg 361 + s +r+k E++ ++rei+n+va ga+r+erhe++++Wr+rle+ GF+++ ++e++a+q +++ r++++ g y ve + + l+l LPERR06G01410.1 485 AGSPARVKAEEM-FAREIRNAVAFDGADRFERHESFGSWRRRLEDgaggGGFRNAGIGEREAMQGRMIARMFGGGGhgkYGVEtiGDGEGLTLR 577 ************.******************************98655569*********************96555689999656788999** PP GRAS 362 WkdrpLvsvSaWr 374 W d+pL++vSaW+ LPERR06G01410.1 578 WLDQPLYTVSAWT 590 ************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 47.695 | 185 | 565 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-104 | 211 | 590 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 612 aa Download sequence Send to blast |
MLAGCSFSSR HQMSTAQRFD ILPCGFSKRG ARSDGGAAAA AATAGDARSC SFRTHPAPAV 60 TQAVTWERTR AVKRAHDEDD VEEYGPIVRA KRTRMVGAGD EVWFNQSIAG TIQSTTMMMA 120 AGEGEEASSA AAEEEEEEKV FLVPSAAAFP HSAAAGTSLA AAKKEEYSKS PSNDSSSSSS 180 DGNSSAAMMT IPPARRNGGV AQAVEQEAFE LVRALTACAE SLAAGNHDAA NYYLARLGET 240 ASPAGPTPMH RVAAYFTEAL AIRVVRTWPH LFDVTPPRHL TDIVADGGED DATALRILNA 300 ITPIPRFIHF TLNERLLRAF DGHDRVHVID FDIKQGIQWP GFLQSLASRD PPPSHVRITG 360 VGESRQELNE TGARLARVAA AVGLAAFEFH AVVDRLEDVR LWMLHVKRGE RVAVNAVLAA 420 HRLLRYDTGA ALADFLALTR STGAAILLLG EHEGDDGGRW EARFAAAMRR YAAVFDAVGA 480 AGMEAGSPAR VKAEEMFARE IRNAVAFDGA DRFERHESFG SWRRRLEDGA GGGGFRNAGI 540 GEREAMQGRM IARMFGGGGH GKYGVETIGD GEGLTLRWLD QPLYTVSAWT PASDDGGGAV 600 SASTTASHSQ QS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-59 | 218 | 593 | 26 | 382 | Protein SCARECROW |
5b3h_A | 3e-59 | 218 | 593 | 25 | 381 | Protein SCARECROW |
5b3h_D | 3e-59 | 218 | 593 | 25 | 381 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G01410.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812393.1 | 0.0 | protein DWARF AND LOW-TILLERING | ||||
Swissprot | Q9LWU9 | 0.0 | DLT_ORYSJ; Protein DWARF AND LOW-TILLERING | ||||
TrEMBL | A0A0D9WLA2 | 0.0 | A0A0D9WLA2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G01410.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6404 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 1e-115 | GRAS family protein |
Publications ? help Back to Top | |||
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