PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

GRF

Protein Properties

Length: 346aa MW: 37521.6 Da PI: 8.3149

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR06G01000.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.4	1.4e-24	91	135	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ LPERR06G01000.1 91 DPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 135 79****************************************986 PP
2	QLQ	60.2	6e-21	19	53	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 aFTaaQ+++L++Q+l+yKyL+a++PvP +Ll++i+ LPERR06G01000.1 19 AFTAAQWAELEQQALIYKYLMAGVPVPGDLLLPIR 53 8********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.1E-11	18	54	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	5.8E-15	19	53	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.897	19	54	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	26.346	91	135	IPR014977	WRC domain
Pfam	PF08879	3.9E-21	92	134	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MLSSSPSAAA VGMGRGAAAF TAAQWAELEQ QALIYKYLMA GVPVPGDLLL PIRPHSAAAA 60 TYSFANPAAA PFYHHHHPSL SYYAYYGKKL DPEPWRCRRT DGKKWRCSKE AHPDSKYCER 120 HMHRGRNRSR KPVESKTSSP AAPQSEPQLS NVTNANHDNA DAPIQSLTVG ANKTHGLSLG 180 GGVGSSQFHL DASSYGSKYS LGAKTDVGEL SFFSGASGNT RGFTIDSPTD SPWHSLPSSV 240 PPYPMSKPRD SGLLSGAYSY SHLEPSQELG QVTIASLSQE QERRSFGGGA GGLLGNVKQE 300 NQPLRPFFDE WPGRRDSWSE MDDERSNQTS FSTTQLSISI PMPKCD

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MLSSSPSAAA VGMGRGAAAF TAAQWAELEQ QALIYKYLMA GVPVPGDLLL PIRPHSAAAA  60
TYSFANPAAA PFYHHHHPSL SYYAYYGKKL DPEPWRCRRT DGKKWRCSKE AHPDSKYCER  120
HMHRGRNRSR KPVESKTSSP AAPQSEPQLS NVTNANHDNA DAPIQSLTVG ANKTHGLSLG  180
GGVGSSQFHL DASSYGSKYS LGAKTDVGEL SFFSGASGNT RGFTIDSPTD SPWHSLPSSV  240
PPYPMSKPRD SGLLSGAYSY SHLEPSQELG QVTIASLSQE QERRSFGGGA GGLLGNVKQE  300
NQPLRPFFDE WPGRRDSWSE MDDERSNQTS FSTTQLSISI PMPKCD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR06G01000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK103508	0.0	AK103508.1 Oryza sativa Japonica Group cDNA clone:J033131E19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641605.1	0.0	growth-regulating factor 5 isoform X4
Swissprot	Q6AWY4	0.0	GRF5_ORYSJ; Growth-regulating factor 5
TrEMBL	A0A0D9WL48	0.0	A0A0D9WL48_9ORYZ; Uncharacterized protein
STRING	LPERR06G01000.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11046	24	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	7e-28	growth-regulating factor 5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]