PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G00620.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | B3 | ||||||||
Protein Properties | Length: 423aa MW: 45524.9 Da PI: 4.7436 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.2 | 6.2e-13 | 307 | 401 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 f +v ++s+ ++ ++++p +f ++ + +t ++ + g+sW ++ + k +++ +GW++F+ +n+L++gD +vF+l+ + el LPERR06G00620.2 307 FTTVISRSHLRNKYQMWVPHRFQRRLPEA----RTGVVLHCGGKSWPASYCGDLKVKKIDV-AGWSNFAVDNRLRVGDACVFELIaAAdTHLEL 395 566677788888899*******9877533....36788999*********77666666554.5********************99544588888 PP EEEEE- CS B3 93 vvkvfr 98 +v+++r LPERR06G00620.2 396 KVQILR 401 888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1580 | 6.6E-69 | 16 | 252 | IPR000845 | Nucleoside phosphorylase domain |
Pfam | PF01048 | 3.1E-22 | 19 | 244 | IPR000845 | Nucleoside phosphorylase domain |
SuperFamily | SSF53167 | 1.13E-36 | 20 | 237 | IPR000845 | Nucleoside phosphorylase domain |
SuperFamily | SSF101936 | 4.12E-15 | 301 | 401 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.3E-16 | 302 | 401 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.63E-15 | 305 | 401 | No hit | No description |
Pfam | PF02362 | 3.3E-11 | 307 | 401 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-6 | 307 | 403 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.632 | 307 | 403 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000003 | Biological Process | reproduction | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009116 | Biological Process | nucleoside metabolic process | ||||
GO:0019509 | Biological Process | L-methionine biosynthetic process from methylthioadenosine | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008930 | Molecular Function | methylthioadenosine nucleosidase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MAPPSDDSPP LPAGAISNLL IVIAMQTEAL PLVNKFHLVE APSNESIFPK GAPWIRYHGN 60 YKGLHIDLVW PGKDPVLGVD CVGTVSAALV TYASIQSLKP DLIINAGTAG GFKAKGAGIG 120 DVFLASDVAF HDRRIPIPVF DMYGIGTRKT FATPNILKEL NLKVGKLSTG DSLDMSPHDE 180 SAIQNNDATV KDMEGAAVAY VADMFSTPAI FVKAVTDIVD GEKPTAEEFL QNLVAVTAAL 240 DKSVTEVMDS PSKQMMQADA SYTNLTGIIK PKVESCDDDD ELLPAPPASG SEDWEVTTPI 300 GTGNPFFTTV ISRSHLRNKY QMWVPHRFQR RLPEARTGVV LHCGGKSWPA SYCGDLKVKK 360 IDVAGWSNFA VDNRLRVGDA CVFELIAAAD THLELKVQIL RGDLPEEVTS KGATSDEPIL 420 IDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2h8g_A | 1e-111 | 16 | 249 | 26 | 257 | 5'-Methylthioadenosine Nucleosidase |
2h8g_B | 1e-111 | 16 | 249 | 26 | 257 | 5'-Methylthioadenosine Nucleosidase |
2qsu_A | 1e-111 | 16 | 249 | 26 | 257 | 5'-methylthioadenosine nucleosidase |
2qsu_B | 1e-111 | 16 | 249 | 26 | 257 | 5'-methylthioadenosine nucleosidase |
2qtg_A | 1e-111 | 16 | 249 | 26 | 257 | 5'-methylthioadenosine nucleosidase |
2qtg_B | 1e-111 | 16 | 249 | 26 | 257 | 5'-methylthioadenosine nucleosidase |
2qtt_A | 1e-111 | 16 | 249 | 26 | 257 | 5'-methylthioadenosine nucleosidase |
2qtt_B | 1e-111 | 16 | 249 | 26 | 257 | 5'-methylthioadenosine nucleosidase |
3lgs_A | 1e-111 | 16 | 249 | 26 | 257 | 5'-methylthioadenosine nucleosidases |
3lgs_B | 1e-111 | 16 | 249 | 26 | 257 | 5'-methylthioadenosine nucleosidases |
3lgs_C | 1e-111 | 16 | 249 | 26 | 257 | 5'-methylthioadenosine nucleosidases |
3lgs_D | 1e-111 | 16 | 249 | 26 | 257 | 5'-methylthioadenosine nucleosidases |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Enzyme of the methionine cycle that catalyzes the irreversible cleavage of the glycosidic bond in 5'-methylthioadenosine (MTA) to adenine and 5'-methylthioribose. Contributes to the maintenance of AdoMet homeostasis and is required to sustain high rates of ethylene synthesis. Inactive towards S-adenosylhomocysteine (SAH/AdoHcy). {ECO:0000269|PubMed:17144895, ECO:0000269|PubMed:18342331, ECO:0000269|PubMed:20345605}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G00620.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB110165 | 0.0 | AB110165.1 Oryza sativa Japonica Group mRNA for hypothetical protein, complete cds, clone: 12FPG037. | |||
GenBank | AK066172 | 0.0 | AK066172.1 Oryza sativa Japonica Group cDNA clone:J013056A05, full insert sequence. | |||
GenBank | AK104797 | 0.0 | AK104797.1 Oryza sativa Japonica Group cDNA clone:001-039-H06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006655705.1 | 1e-166 | PREDICTED: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2-like | ||||
Swissprot | Q9T0I8 | 1e-110 | MTN1_ARATH; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 | ||||
TrEMBL | A0A0D9WKZ4 | 0.0 | A0A0D9WKZ4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G00620.1 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 5e-09 | related to vernalization1 1 |