PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G00460.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 200aa    MW: 21769.8 Da    PI: 10.2599
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G00460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B388.36.4e-2834138199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f+kv tpsdv+k++rlv+pk++ae++         +++ ++ l +ed  g  ++W+++++y+ +s++yv+tkGW++Fv++++L +gD+v F   
  LPERR06G00460.1  34 FEKVVTPSDVGKLNRLVVPKQYAEKYfplgaaaR-SSPAGTVLCFEDAGGggETWRFRYSYWSSSQSYVITKGWSRFVRDKRLAAGDTVSFC-- 124
                      99***************************99953.4557789*****87778****************************************.. PP

                      SSSEE..EEEEE-S CS
               B3  86 grsefelvvkvfrk 99 
                      + s+++l++  +r+
  LPERR06G00460.1 125 RGSGGRLFIDCRRR 138
                      44999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-3728146IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-2830136IPR015300DNA-binding pseudobarrel domain
CDDcd100175.52E-2033137No hitNo description
PfamPF023624.9E-2534138IPR003340B3 DNA binding domain
PROSITE profilePS5086314.07134139IPR003340B3 DNA binding domain
SMARTSM010193.4E-2034139IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAVSTAIVGW ESSRREKLQG GGHGGGGERR EHMFEKVVTP SDVGKLNRLV VPKQYAEKYF  60
PLGAAARSSP AGTVLCFEDA GGGGETWRFR YSYWSSSQSY VITKGWSRFV RDKRLAAGDT  120
VSFCRGSGGR LFIDCRRRAD SSTSLSPVAA AALIKAQRPP SMSVVVDEKE VVHGGGRRCL  180
RLFGVDLQLR AETPALDLQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-46301384113B3 domain-containing transcription factor NGA1
5os9_B2e-46301384113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G00460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656550.21e-85PREDICTED: B3 domain-containing protein Os06g0107800-like
SwissprotQ5VS551e-78Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLA0A0D9WKW61e-143A0A0D9WKW6_9ORYZ; Uncharacterized protein
STRINGLPERR06G00460.11e-144(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.12e-45B3 family protein