PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G23920.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 253aa    MW: 27399.7 Da    PI: 4.493
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G23920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05228250223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C+ C+k+F++ + L++H +  H
  LPERR05G23920.1 228 SCKSCSKTFNSEMALQSHSKAkH 250
                      7*****************98777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.949227253IPR007087Zinc finger, C2H2
PROSITE patternPS000280229250IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEFWGIEVKP GQTVKCEPED DRFLHLSQAA LGESKKGTDN AVMYVKVDDQ KLVIGSLSAD  60
KFPQIQFDLV FDKKFELSHT SKSASEQKKL GETDSSASKA KAENNKVDED DDDDDSDDDD  120
SEDGLSPEDD DDDDSSEDDS SDEDEDESDE EETPKKPETG KKRAAEVVLK TPASDKKAKV  180
ATPSGQKTGD KKGVHVATPH PAKQASKTPV NNDKAKEKSP KSGGGSISCK SCSKTFNSEM  240
ALQSHSKAKH SAK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G23920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728451e-151AK072845.1 Oryza sativa Japonica Group cDNA clone:J023142J09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654887.11e-116PREDICTED: histone deacetylase HDT2-like isoform X2
RefseqXP_015639422.11e-116histone deacetylase HDT2
SwissprotQ8LJS26e-51HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLA0A0D9WKM91e-178A0A0D9WKM9_9ORYZ; Uncharacterized protein
STRINGLPERR05G23920.11e-179(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.23e-25histone deacetylase 3