PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G23910.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 805aa    MW: 91070.4 Da    PI: 5.4509
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G23910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.82.2e-09387410427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      ++C++++ +GtC+yG +C+F+H++
  LPERR05G23910.1 387 RNCSYYMHNGTCSYGKKCHFNHPE 410
                      79********************96 PP
2zf-CCCH24.64.3e-08524550127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+f+ r+G Ck+ ++Ck++H++
  LPERR05G23910.1 524 PGRPECPFYTRFGDCKFASSCKYHHSK 550
                      689**********************95 PP
3zf-CCCH24.35.4e-08589615127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+f+ r+G Ck+ + Ck++H++
  LPERR05G23910.1 589 PGRPECPFYTRYGDCKFASACKYHHSK 615
                      689**********************95 PP
4zf-CCCH30.27.6e-10639663125
                      --S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                      +++++C+f++++ +C++G  CkF+H
  LPERR05G23910.1 639 PGEPECPFYMKNRFCQFGVECKFHH 663
                      5799********************* PP
5zf-CCCH201.2e-06708734127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ Cr+++++G Cky + C F+H++
  LPERR05G23910.1 708 PGQPDCRYYMQFGKCKYFSACIFHHPK 734
                      5789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.685383411IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-5383410IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5386411IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-7387410IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4389410IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295523551IPR000571Zinc finger, CCCH-type
SMARTSM003560.011523550IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-5524550IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.995588616IPR000571Zinc finger, CCCH-type
SMARTSM003560.0081588615IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-5589615IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.784638666IPR000571Zinc finger, CCCH-type
SMARTSM003560.01638665IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7640663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638707735IPR000571Zinc finger, CCCH-type
SMARTSM003560.025707734IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-5711737IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.174762790IPR000571Zinc finger, CCCH-type
SMARTSM003560.042762789IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5766792IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MNQPPFTIKV RIFRSWYQHR IQQRSYIAAE DKKKPLDQFA SDIFRDNSAT GYLEVAEHGV  60
IGESTETVDA ISVHHQVKEA EHDVAGQSGQ TMDAITVDDQ VKEVEHDATV EGCETADGIA  120
VDDQVKEAEH DVVGESGETV DAIAVDDQVK ELEHDVTGEG GETADDIAVD DQVKEMQHDL  180
IGQSGENADA IAVGNQGKEV RHADIREEEV EQCVVGVFHT TKDKDAMEEK VEQNVIGKEV  240
IAMKTQDKAV EQCTNDELRT NKNEKAVNKH IRVEGQGAID ENVVELCIDD ELRAAKDVVT  300
FPDQGNMLEQ TIGDEQGATK GKFAVQNNIE MVDHVSYEWG TTEDDLAINM LKAKPDVSSL  360
PSENENHGVT EILELNRVGL PIREGARNCS YYMHNGTCSY GKKCHFNHPE QVIDAQFDPP  420
TGWEDDALPS PPPSKIDDKS YFKRSFTHVA SEKKSSTSEV LPPNILRMLL PPQKVAPGIE  480
EKAIKVNKDT NWPVASDDCN GCRSTDSSGR DLCKQEYVNY PERPGRPECP FYTRFGDCKF  540
ASSCKYHHSK DKFPRRSSVG SDNSSRCRSA DSSGGALCKR EHVSYPERPG RPECPFYTRY  600
GDCKFASACK YHHSKDRFPS TCHSNDLLQG ELVEYPERPG EPECPFYMKN RFCQFGVECK  660
FHHTKGSIPT RWSLTDVKKP LAPEEHHPTI EIKPQDHMCQ QDQYPERPGQ PDCRYYMQFG  720
KCKYFSACIF HHPKDRLSNG WHPLENVLKQ EEHKENTLYP ERPGELECVY FMRHGSCKFQ  780
RNCKYHHPKD RLSKKLGKIM QLLRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G23910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692874.10.0PREDICTED: uncharacterized protein LOC107304222 isoform X1
TrEMBLA0A0D9WKM80.0A0A0D9WKM8_9ORYZ; Uncharacterized protein
STRINGLPERR05G23910.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147291820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.18e-42floral homeotic protein (HUA1)