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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G23340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | CPP | ||||||||
Protein Properties | Length: 153aa MW: 16784 Da PI: 8.4866 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 23.3 | 1.3e-07 | 20 | 46 | 15 | 42 |
TCR 15 kkYCeCfaagkkCseeCkCedCkNkeek 42 k+YC Cf+ ++C + CkC++C+N+e++ LPERR05G23340.1 20 KNYCPCFSTYHFCVD-CKCSGCHNTEDN 46 9**************.********9975 PP | |||||||
2 | TCR | 44.8 | 2.5e-14 | 106 | 143 | 3 | 40 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 kgC C+kskC k+YCeC+++++ C+++CkC++C N++ LPERR05G23340.1 106 AKGCICRKSKCSKNYCECYKNKVGCTSKCKCQECGNQH 143 69**********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 22.907 | 5 | 144 | IPR005172 | CRC domain |
Pfam | PF03638 | 3.2E-5 | 20 | 44 | IPR005172 | CRC domain |
Pfam | PF16682 | 5.1E-6 | 20 | 44 | IPR032049 | E3 ubiquitin-protein ligase Msl2, CXC domain |
SMART | SM01114 | 0.0022 | 20 | 46 | IPR033467 | Tesmin/TSO1-like CXC domain |
SMART | SM01114 | 3.8E-8 | 104 | 145 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.8E-10 | 107 | 142 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MNRNRRRRLM AVSSFILGAK NYCPCFSTYH FCVDCKCSGC HNTEDNGDEV EETFAIARMK 60 NPGAFGPKIV SVQDATIVDP RSSSGAVSDP KNSSGAVPGN EQLMYAKGCI CRKSKCSKNY 120 CECYKNKVGC TSKCKCQECG NQHGIKNSEY TTS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G23340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640260.1 | 1e-49 | protein tesmin/TSO1-like CXC 2 isoform X2 | ||||
Refseq | XP_025881429.1 | 1e-49 | protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
TrEMBL | A0A0D9WKF0 | 1e-109 | A0A0D9WKF0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G23340.1 | 1e-110 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12267 | 23 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04850.1 | 4e-20 | Tesmin/TSO1-like CXC domain-containing protein |