PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G22790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | WRKY | ||||||||
Protein Properties | Length: 153aa MW: 17211.5 Da PI: 10.1255 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.3 | 1.6e-33 | 31 | 88 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt ++C vkk+vers++d ++v++tYeg+H+h+ LPERR05G22790.1 31 EDGYRWRKYGQKAVKNSTYPRSYYRCTAPRCGVKKRVERSQQDASMVITTYEGQHTHP 88 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-35 | 15 | 90 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-29 | 22 | 90 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.262 | 25 | 90 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-38 | 30 | 89 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.4E-27 | 31 | 88 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MNNNQAKKKG EKKGREPRVA FMTKSEVDHL EDGYRWRKYG QKAVKNSTYP RSYYRCTAPR 60 CGVKKRVERS QQDASMVITT YEGQHTHPSP MGYHQHRQRA AAAMVAAGAG YYPYFGTAPL 120 SLPGFCPDDD ALAAGVTTMN HQQMSIHAAC PRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-28 | 20 | 90 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 7e-28 | 20 | 90 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G22790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109568 | 1e-102 | AK109568.1 Oryza sativa Japonica Group cDNA clone:002-130-E04, full insert sequence. | |||
GenBank | AY870600 | 1e-102 | AY870600.1 Oryza sativa (japonica cultivar-group) WRKY8 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006655633.1 | 9e-65 | PREDICTED: probable WRKY transcription factor 4 | ||||
Swissprot | Q8VWJ2 | 1e-42 | WRK28_ARATH; WRKY transcription factor 28 | ||||
TrEMBL | A0A0D9WK77 | 1e-112 | A0A0D9WK77_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G22790.1 | 1e-113 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 3e-40 | WRKY DNA-binding protein 71 |
Publications ? help Back to Top | |||
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