PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G22130.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 265aa    MW: 28862.5 Da    PI: 10.011
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G22130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-1989139256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr++  +g+WvAeIr p +   r r++lg+++++e Aa a+++a+ kl+ge
  LPERR05G22130.1  89 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAFKLRGE 139
                      59****999.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.63E-2988146No hitNo description
PROSITE profilePS5103223.16989146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-3089146IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2289146IPR016177DNA-binding domain
SMARTSM003801.1E-3389152IPR001471AP2/ERF domain
PfamPF008471.7E-1390139IPR001471AP2/ERF domain
PRINTSPR003672.3E-1290101IPR001471AP2/ERF domain
PRINTSPR003672.3E-12128148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDASLRTLPP ASFPGEVRSA VSSLLLSPGG SALDTVFSHL PPPVTIPPLG SSVYYRQSEL  60
LRHFAASQTA AAASSSASVN SAATAERKLY RGVRQRQWGK WVAEIRLPQN RVRVWLGTYD  120
SPETAAHAYD RAAFKLRGEY ARLNFPGVMD GAAAGDVPDH LRHLRDVVDA KIQAIRVRMA  180
RKRARARRQR EEIKQSQLAD SVNAARHVAA ERAASETTTT TTTTTTTSSS YGSPDGVLSV  240
DGGGDCPLER MPSFDPELIW EMLNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-1985146163ATERF1
3gcc_A8e-1985146163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179185ARKRARA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G22130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638431.11e-124ethylene-responsive transcription factor ERF061
SwissprotQ9C7W28e-39ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A0D9WJZ60.0A0A0D9WJZ6_9ORYZ; Uncharacterized protein
STRINGLPERR05G22130.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.18e-31ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]