PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G21750.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 87aa    MW: 9893.84 Da    PI: 5.0363
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G21750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-071459345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W+t E + + +a + +G +   +W+++++ mg  +++++++ ++ 
  LPERR05G21750.1 14 QWSTKENKMFEQALAYYGEDtpnRWDKVSSAMGGIKSAEEVRCHYE 59
                     7********************************6689****99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.353762IPR017877Myb-like domain
SuperFamilySSF466894.26E-11860IPR009057Homeodomain-like
PfamPF002494.7E-61459IPR001005SANT/Myb domain
CDDcd001670.002661961No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSGSRSSSPN SNSQWSTKEN KMFEQALAYY GEDTPNRWDK VSSAMGGIKS AEEVRCHYEV  60
LQYDVDMIEA GRVPFPNYNT QGFWSRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-23682277RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G21750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147389.11e-41uncharacterized LOC100280998
RefseqXP_021303052.11e-41protein RADIALIS-like 3
SwissprotF4JVB86e-24RADL1_ARATH; Protein RADIALIS-like 1
SwissprotQ6NNN05e-24RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A0D9WJV43e-59A0A0D9WJV4_9ORYZ; Uncharacterized protein
STRINGLPERR05G21750.15e-60(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-24RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]