PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G21590.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 386aa    MW: 41351.8 Da    PI: 6.4677
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G21590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.81.1e-33202259259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d  vv++tYeg+H+h+
  LPERR05G21590.1 202 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSFQDAAVVITTYEGKHTHP 259
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-35186261IPR003657WRKY domain
SuperFamilySSF1182903.27E-29193261IPR003657WRKY domain
PROSITE profilePS5081131.904196261IPR003657WRKY domain
SMARTSM007744.3E-40201260IPR003657WRKY domain
PfamPF031061.6E-26202259IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSGGASHDHL QLAGGDVGFP FHDELASLFA QQQQQQQQQL PWSFAPATPL DYEAFVAGTE  60
FDDDDVAPPP PTLEEVKREI LQLDTASAGV GFFSGGGGGA PATAGPMTPN SMSVSSTSSE  120
ACGGGGAGVG GEEEFAGKCK KEEEGDHGGD DGKEGSETNK EDGEGDDKNK KGAAGKGKGK  180
GEKRPRQPRF AFMTKSEVDH LEDGYRWRKY GQKAVKNSPF PRSYYRCTTQ KCPVKKRVER  240
SFQDAAVVIT TYEGKHTHPI PATLRGTTAH LLQYHPGHFA GGMPSAIDAL GNHLLPPPPH  300
QQQQQHHLLH HHAPPPMHHQ QMLQPAAGLA AIVASTTAAS AMAPASSAPL RMQHFMAQDY  360
GLLQDMFIPS SSSLFMNSND DTNNHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-26192262878Probable WRKY transcription factor 4
2lex_A1e-26192262878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G21590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418441e-103AY341844.1 Oryza sativa (japonica cultivar-group) WRKY3 mRNA, complete cds.
GenBankAY3418551e-103AY341855.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
GenBankAY8706041e-103AY870604.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637917.13e-96WRKY transcription factor 23
TrEMBLA0A0D9WJT30.0A0A0D9WJT3_9ORYZ; Uncharacterized protein
STRINGLPERR05G21590.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.14e-50WRKY DNA-binding protein 71