PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G21530.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 277aa    MW: 29413.8 Da    PI: 6.0616
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G21530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.9e-18115164355
              AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+++AeIrd  +   k +r++lg+f ta+eAa a++ a+++++g
  LPERR05G21530.1 115 YRGVRRRP-WGKFAAEIRDtRR---KGARVWLGTFATADEAALAYDVAALRMRG 164
                      9*******.**********332...34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-14114164IPR001471AP2/ERF domain
PROSITE profilePS5103223.762114172IPR001471AP2/ERF domain
SMARTSM003801.1E-35114178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-30114172IPR001471AP2/ERF domain
PRINTSPR003672.7E-10115126IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-22115173IPR016177DNA-binding domain
CDDcd000183.92E-23122172No hitNo description
PRINTSPR003672.7E-10138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAIGEAAAAA NSSQNYDTRN ILENVWATIM TTPPPPSSSS PPAVTSSVAG GEEYSAMLER  60
LPSLGRWISM GAEEWDELLL GGSSSVLASD YSSSSTTATA TATTAAAAAG ARRSYRGVRR  120
RPWGKFAAEI RDTRRKGARV WLGTFATADE AALAYDVAAL RMRGRRAHLN FPLDTVQRQL  180
DRDLLLAGAG VGAGDQTTTA TATRVRRRKR RSSAGGGGGD MSMPAARCDK MVSFADSERS  240
DQISMQECLT SDDGGAGVID FEEIGGAYWD YLFPPLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-25113173464ATERF1
3gcc_A2e-25113173464ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G21530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655590.11e-84PREDICTED: ethylene-responsive transcription factor ERF094-like
TrEMBLA0A0D9WJS40.0A0A0D9WJS4_9ORYZ; Uncharacterized protein
STRINGLPERR05G21530.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61590.12e-13ERF family protein