PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G20190.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 353aa    MW: 36625.6 Da    PI: 7.5873
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G20190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.34.3e-06248288954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+r+ +++  L++l+P        K++ a++L +A  Y+k L
  LPERR05G20190.1 248 ARLRRERVSERLRVLQRLVPGG-----SKMDTATMLDEAASYLKFL 288
                      599*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.259239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-13245298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.15E-10245293No hitNo description
Gene3DG3DSA:4.10.280.101.7E-9248296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MYMDAFGWSS QSTPAAAGDD DDDVLLAAVL GASFELHSIV DGNGAVSPGD AYGLDVDLPL  60
TIPHDASAAT AFLGSMDALP SIAGGGGLLD TITFPNVAES TVQSAAAAAF SGGGNISSGE  120
SNTYDTEVAS SSAPCAAVST TTKRKLPENK YSIIAADRRN TKRSPPPSIS SSSSSAAARS  180
SITFGGIGRG GYEPDKEAIA QVKEMIYRAA AMRSVSSTLA AVDQSPSSPS PRRRKNVRIS  240
SDPQTVAARL RRERVSERLR VLQRLVPGGS KMDTATMLDE AASYLKFLKS QLQALETLGN  300
GHNGSNGNLL QNYYFTGNGR NNAAASTTGN GTVLAFGRDG LSGYVKSNRN LQL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230234PRRRK
2248253RLRRER
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269|PubMed:21549224}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G20190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638480.15e-98transcription factor LATE FLOWERING
SwissprotA0A0P0WQ905e-99LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBLA0A0D9WJ820.0A0A0D9WJ82_9ORYZ; Uncharacterized protein
STRINGLPERR05G20190.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-24bHLH family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]