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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G17470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 20100.6 Da PI: 9.5018 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.2e-19 | 20 | 69 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd ++ ++r++lg+++t+ eAa a+++a+ +l+g LPERR05G17470.1 20 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTYDTPVEAALAYDRAAVALRG 69 6********.**********883....5**********************99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.71E-27 | 19 | 74 | No hit | No description |
Pfam | PF00847 | 3.5E-12 | 20 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-21 | 20 | 77 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-29 | 20 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.496 | 20 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-32 | 20 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-9 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-9 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MELDMGGGGA GCGGGRPEAH YRGVRKRPWG RYAAEIRDPW KKTRVWLGTY DTPVEAALAY 60 DRAAVALRGV KARTNFGGGG GGGPDHGNGN NGQLPQIHHQ HQRMHQQPPQ LPPLGAGGHF 120 GGLDISHPSP WHFVYFPARM HAMGPAVPGT PVVAASLPST TLELRTGPSA GDAAALPFDL 180 NEPPPSLLFG S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-19 | 20 | 76 | 5 | 62 | ATERF1 |
3gcc_A | 1e-19 | 20 | 76 | 5 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G17470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC108523 | 7e-86 | AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence. | |||
GenBank | AK242393 | 7e-86 | AK242393.1 Oryza sativa Japonica Group cDNA, clone: J080064G22, full insert sequence. | |||
GenBank | AP014961 | 7e-86 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 7e-86 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. | |||
GenBank | CT828880 | 7e-86 | CT828880.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038E23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638389.1 | 3e-73 | ethylene-responsive transcription factor 12 | ||||
TrEMBL | A0A0D9WI73 | 1e-135 | A0A0D9WI73_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G17470.1 | 1e-135 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 3e-22 | ERF domain protein 12 |