PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G16310.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 308aa    MW: 34661.8 Da    PI: 9.2951
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G16310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-18148235196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k++++s+v++  +l lp +f++ h  + +++++++lede+g +++  +   +++ +  l++GW++F+  ++L++gD++vF+l++ ++f  ++
  LPERR05G16310.1 148 FVKTMVRSHVSSCFWLGLPTRFCKLHL-P-PREFKMVLEDEEGGEFDSVY--IGNRTG--LSGGWRGFAMHKNLEDGDSLVFELVEPDRF--KI 233
                      89*********************8774.4.4779****************..555444..***********************9987777..55 PP

                      EE CS
               B3  95 kv 96 
                       +
  LPERR05G16310.1 234 YI 235
                      55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.9E-21140238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-24141237IPR015300DNA-binding pseudobarrel domain
CDDcd100176.45E-27146237No hitNo description
PROSITE profilePS5086312.266148239IPR003340B3 DNA binding domain
SMARTSM010192.1E-23148239IPR003340B3 DNA binding domain
PfamPF023622.6E-17148236IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MVRRRGGGGS VAAEAAGEAS GAAYEEERRK RVLENLKHLE DLGISKMSKS LLEAARLQKV  60
QTTRASPKPR KKFEATEVRR SSRARNSVSY KDDFDELDSF LRRRRGGSRN TEQGRDYTGR  120
IASYEQQQRA YKRAERIQNS LDPENPSFVK TMVRSHVSSC FWLGLPTRFC KLHLPPREFK  180
MVLEDEEGGE FDSVYIGNRT GLSGGWRGFA MHKNLEDGDS LVFELVEPDR FKIYIIKAAD  240
EDVNESEPVD EEADGDKKDT DTKDAVEQDD SPNAEPLKGA KRRKLCGRRS CLAFSSKAGS  300
LTKKSASP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276282LKGAKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G16310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0687050.0AK068705.1 Oryza sativa Japonica Group cDNA clone:J013160D16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639491.11e-165B3 domain-containing protein Os05g0481400 isoform X2
SwissprotQ5KQI41e-167Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A0D9WHT10.0A0A0D9WHT1_9ORYZ; Uncharacterized protein
STRINGLPERR05G16310.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.16e-41B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]