PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G16170.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 323aa    MW: 34705.2 Da    PI: 4.6487
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G16170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY826e-26119180159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +dD + WrKYGqKe+k+s++pr YYrC+++   gC+++k+v++s+ dp++ +itY geH+++
  LPERR05G16170.1 119 MDDNFLWRKYGQKEIKNSKHPRFYYRCSYKddhGCKATKQVQQSEADPSIYVITYFGEHTCR 180
                      58***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-26114180IPR003657WRKY domain
PROSITE profilePS5081121.482114177IPR003657WRKY domain
SuperFamilySSF1182904.05E-25115180IPR003657WRKY domain
SMARTSM007741.9E-37119181IPR003657WRKY domain
PfamPF031061.2E-25120180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MALTTALAAG DSDVLPTRFV AEGRDSAARL YALLGQCHQL LAGSSTLHGP VGLAEQIFHC  60
FDRALAKLHG VAGAEEDNVA SASSGRKRKP EHGSVAATSK RIKASGGGNG GRVVRKATMD  120
DNFLWRKYGQ KEIKNSKHPR FYYRCSYKDD HGCKATKQVQ QSEADPSIYV ITYFGEHTCR  180
HGNDAAAAVV DGGGDEDSSS PAKFVISFGN STSSGSDNSA IRWPCAGDDA QINNESSQES  240
SLVSEAGEEE ELRPCTVSDH GELVEESTTP PVPDQPLGLT ALPDLEPLLE AYPLDMELGD  300
SSFGIDEIFN FDEHLFYSID TAW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-22119180869OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G16170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447371e-51AC144737.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0018K15, complete sequence.
GenBankAP0149611e-51AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-51CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692635.11e-109PREDICTED: probable WRKY transcription factor 62
TrEMBLA0A0D9WHQ80.0A0A0D9WHQ8_9ORYZ; Uncharacterized protein
STRINGLPERR05G16170.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-23WRKY DNA-binding protein 70