PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G16150.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 296aa    MW: 30608.3 Da    PI: 9.7457
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G16150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY811.2e-25128188259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy WrKYGqKe+k+s+ pr Y+rC+++   gC+++++v++s++dp++ +itY g+H+++
  LPERR05G16150.1 128 EDGYLWRKYGQKEIKNSKRPRLYFRCSYKdddGCTATRHVQQSEDDPSLYVITYFGDHTCS 188
                      7***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-26120188IPR003657WRKY domain
SuperFamilySSF1182906.41E-24124188IPR003657WRKY domain
SMARTSM007745.5E-37127189IPR003657WRKY domain
PROSITE profilePS5081120.782128185IPR003657WRKY domain
PfamPF031068.1E-25128187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MALIATGATS AASPAAASMA ASELMAQGRN SAAVLETILQ GASLPPAHGG LQLLAAEILR  60
CCDRALTVMR AGEAAESSAA AAAAGVKRKP ATTTAPANRK RRANGGSSGG GASSPAAATR  120
VERSRTSEDG YLWRKYGQKE IKNSKRPRLY FRCSYKDDDG CTATRHVQQS EDDPSLYVIT  180
YFGDHTCSRK LAAGVDEDDG TFQKFVINFG SASASSSPPL LYESSSYSSG IRRETTSTIV  240
EAVKLLLAGG SRRGGIRGEG RAGRIASGVG GGEFAGGRLF LCVSGTGAFA RLLELG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-23128187968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
186101KRKPATTTAPANRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G16150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447372e-75AC144737.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0018K15, complete sequence.
GenBankAP0149612e-75AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126172e-75CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655415.13e-91PREDICTED: probable WRKY transcription factor 62
TrEMBLA0A0D9WHQ60.0A0A0D9WHQ6_9ORYZ; Uncharacterized protein
STRINGLPERR05G16150.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.11e-20WRKY DNA-binding protein 54