PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G15200.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 122aa    MW: 13474.1 Da    PI: 8.2906
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G15200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-055375123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++Cg+ F+    L  H+r+H
  LPERR05G15200.1 53 HPCSKCGQEFRMGQALGGHMRRH 75
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0018217IPR007087Zinc finger, C2H2
SuperFamilySSF576678.71E-74879No hitNo description
PROSITE profilePS5015711.2615380IPR007087Zinc finger, C2H2
PfamPF139123.7E-105378IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MRRFSTFQAL GGHMTGHTRL EVQLRQQREH GNSGGGSPAM RVTNRRATGQ LWHPCSKCGQ  60
EFRMGQALGG HMRRHRAEEA AAAQASEEVQ PEPETPNLNN PLVEEVGEGE VAQVPRLLNL  120
LV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G15200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638878.11e-22zinc finger protein ZAT7
TrEMBLA0A0D9WHC78e-83A0A0D9WHC7_9ORYZ; Uncharacterized protein
STRINGLPERR05G15200.11e-83(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.12e-16C2H2 family protein