PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G14460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C2H2 | ||||||||
Protein Properties | Length: 384aa MW: 42250.2 Da PI: 6.4473 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18 | 7.8e-06 | 212 | 231 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k F+r n++ H+ LPERR05G14460.1 212 FVCHVCNKAFNRYNNMQMHM 231 89*****************9 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00022 | 299 | 321 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk+F k + ++H +++ LPERR05G14460.1 299 FACRRCGKPFAVKGDWRTHEKNC 321 78*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.09E-5 | 208 | 235 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-5 | 212 | 231 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.388 | 212 | 239 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 214 | 234 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.67E-6 | 283 | 319 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.5E-5 | 286 | 319 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MVLSACTMVE NSGYRGGGSV PFFEWLKPRS SPPPPSPSTT SSYSTTSSSS LTAPSREEGQ 60 QLGGGDGTML CLPLLGRLGE EPVADDGGKM NNNSFKEEVS NTTDVDAGVD LNIALPAASG 120 GCSSEDTPMD EDEDEDDDED EEEDMEEKVE VGHDQKFKVE ERDQVVHSEG LNYVATVEDR 180 SKAGDVVADA GCHGRRYWIP TPAQILIGPV QFVCHVCNKA FNRYNNMQMH MWGHGREYRK 240 GPESLKGTQA STALAMLKLP CYCCAAGCRN NVSHPRARPL KDFRTLQTHY KRKHGAKPFA 300 CRRCGKPFAV KGDWRTHEKN CGKRWFCACG SDFKHKRSLN DHVRSFGGGH FPVAAPPTTK 360 QQQQQRIICF DEHSTAAAMH VMAD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G14460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102658 | 0.0 | AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640742.1 | 1e-167 | protein TRANSPARENT TESTA 1 isoform X1 | ||||
Swissprot | Q8W030 | 4e-96 | ZWIP4_ARATH; Zinc finger protein WIP4 | ||||
TrEMBL | A0A0D9WH32 | 0.0 | A0A0D9WH32_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G14460.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4472 | 36 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51220.1 | 4e-96 | WIP domain protein 5 |
Publications ? help Back to Top | |||
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