PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G14130.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 328aa    MW: 34049.9 Da    PI: 5.5522
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G14130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.5e-20133182255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  LPERR05G14130.1 133 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 182
                      7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.43E-20133192No hitNo description
Gene3DG3DSA:3.30.730.105.4E-33133191IPR001471AP2/ERF domain
PROSITE profilePS5103225.752133190IPR001471AP2/ERF domain
PfamPF008472.6E-14133182IPR001471AP2/ERF domain
SMARTSM003805.3E-37133196IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22133191IPR016177DNA-binding domain
PRINTSPR003677.6E-12134145IPR001471AP2/ERF domain
PRINTSPR003677.6E-12156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MADHRRRFHG GGGGEDRQAV VDDGGELEAA AGGLLSGEYQ AQEMSTMVSA LTWVVAGHDD  60
GRGGGQPVVS SPGGGGVYAH ADAGQGSYYY YGGGQEQINS DVHAAAMDEH SPTYTVETSS  120
PSAAAADQDQ GRRYRGVRQR PWGKWAAEIR DPHKAARVWL GTFDTAEAAA RAYDEAALRF  180
RGSRAKLNFP EDARLTNPPG AAATTAPPVA AASAAYPATA FSDYLQYQML LHGGGQGGSA  240
GNNYPLYYGA AAMSGSQMGP YPSISTSSVT VASVPSSSAA SSSSGYRPYG DQAAVQWTWP  300
DGGGGWSTYP ATLGSSSQYP PPPRPPQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-23130190263ATERF1
3gcc_A1e-23130190263ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G14130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1053189e-99AC105318.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1058_F05, complete sequence.
GenBankAP0149619e-99AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638449.22e-77ethylene-responsive transcription factor ABR1
TrEMBLA0A0D9WGY70.0A0A0D9WGY7_9ORYZ; Uncharacterized protein
STRINGLPERR05G14130.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1742999
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-21ethylene response factor 110