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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G13650.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 459aa MW: 50841.8 Da PI: 4.4878 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.6 | 5.1e-49 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtd elv +yLk+k+ gkk + ++i++vd+yk+ PwdLp + ++++++ ew+fF++rdkky++g+r+nr+t +gyWk++gkd+++ LPERR05G13650.2 6 LPPGFRFHPTDVELVAYYLKRKLMGKKPLV-QAISDVDMYKFAPWDLPaQsCLQSRDLEWFFFCPRDKKYPKGSRTNRSTPNGYWKTSGKDRTI 98 79*************************766.89**************95347778888************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vg kktL+f++g+apkg++tdWvm ey++ LPERR05G13650.2 99 EL-NSRIVGSKKTLIFHEGKAPKGNRTDWVMYEYKM 133 **.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-59 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.722 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-25 | 7 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MAQTCLPPGF RFHPTDVELV AYYLKRKLMG KKPLVQAISD VDMYKFAPWD LPAQSCLQSR 60 DLEWFFFCPR DKKYPKGSRT NRSTPNGYWK TSGKDRTIEL NSRIVGSKKT LIFHEGKAPK 120 GNRTDWVMYE YKMEDNELVS AGFSKDDYVL CKIFKKSGLG PRIGEQYGAP FNEAEWELAD 180 AETSMFPLLQ TTNVETSAFP LLPSSEVVNS TDETYVQPSV AVKAIEELPV QHLRDVYTGN 240 KSTSLNTNAI DDCALMELPY QHSVQSIGDE VVSVNNFSNK INNADSPLVD GLVLEELSRF 300 LTDSPHHGNP VGEHSGLPPM SEAEAHAFEV NTNDLYNEIT GLAELGVPNG DGISVSNPGV 360 TEQHTSQPTY IGVPSNENYL NMDDLFAPDP TLSYAYAVPN NPYWKFPMDQ SAYDSTTSAA 420 FLSSPTMPSF ADDLPAIANN DVSDTGDIVG FHMLAVVHN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-49 | 2 | 157 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00583 | DAP | Transfer from AT5G64060 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G13650.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB362160 | 0.0 | AB362160.1 Oryza sativa Japonica Group mRNA for transcription factor, complete cds. | |||
GenBank | AK099540 | 0.0 | AK099540.1 Oryza sativa Japonica Group cDNA clone:J013032G17, full insert sequence. | |||
GenBank | EU846998 | 0.0 | EU846998.1 Oryza sativa Japonica Group clone KCS104B01 NAM-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639254.1 | 0.0 | NAC domain-containing protein 78 isoform X1 | ||||
TrEMBL | A0A0D9WGR4 | 0.0 | A0A0D9WGR4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G13650.2 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4731 | 36 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 6e-82 | NAC domain containing protein 103 |