PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 352aa MW: 39211 Da PI: 4.6643

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR05G13650.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.4	3e-49	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtd elv +yLk+k+ gkk + ++i++vd+yk+ PwdLp + ++++++ ew+fF++rdkky++g+r+nr+t +gyWk++gkd+++ LPERR05G13650.1 6 LPPGFRFHPTDVELVAYYLKRKLMGKKPLV-QAISDVDMYKFAPWDLPaQsCLQSRDLEWFFFCPRDKKYPKGSRTNRSTPNGYWKTSGKDRTI 98 79***********************766.89**********95347778888******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vg kktL+f++g+apkg++tdWvm ey++ LPERR05G13650.1 99 EL-NSRIVGSKKTLIFHEGKAPKGNRTDWVMYEYKM 133 .999****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-59	3	156	IPR003441	NAC domain
PROSITE profile	PS51005	56.722	6	156	IPR003441	NAC domain
Pfam	PF02365	1.4E-25	7	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MAQTCLPPGF RFHPTDVELV AYYLKRKLMG KKPLVQAISD VDMYKFAPWD LPAQSCLQSR 60 DLEWFFFCPR DKKYPKGSRT NRSTPNGYWK TSGKDRTIEL NSRIVGSKKT LIFHEGKAPK 120 GNRTDWVMYE YKMEDNELVS AGFSKDDYVL CKIFKKSGLG PRIGEQYGAP FNEAEWELAD 180 AETSMFPLLQ TTNVETSAFP LLPSSEHSGL PPMSEAEAHA FEVNTNDLYN EITGLAELGV 240 PNGDGISVSN PGVTEQHTSQ PTYIGVPSNE NYLNMDDLFA PDPTLSYAYA VPNNPYWKFP 300 MDQSAYDSTT SAAFLSSPTM PSFADDLPAI ANNDVSDTGD IVGFHMLAVV HN

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MAQTCLPPGF RFHPTDVELV AYYLKRKLMG KKPLVQAISD VDMYKFAPWD LPAQSCLQSR  60
DLEWFFFCPR DKKYPKGSRT NRSTPNGYWK TSGKDRTIEL NSRIVGSKKT LIFHEGKAPK  120
GNRTDWVMYE YKMEDNELVS AGFSKDDYVL CKIFKKSGLG PRIGEQYGAP FNEAEWELAD  180
AETSMFPLLQ TTNVETSAFP LLPSSEHSGL PPMSEAEAHA FEVNTNDLYN EITGLAELGV  240
PNGDGISVSN PGVTEQHTSQ PTYIGVPSNE NYLNMDDLFA PDPTLSYAYA VPNNPYWKFP  300
MDQSAYDSTT SAAFLSSPTM PSFADDLPAI ANNDVSDTGD IVGFHMLAVV HN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-50	2	157	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250\|UniProtKB:Q9C8W9}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00583	DAP	Transfer from AT5G64060	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR05G13650.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB362160	0.0	AB362160.1 Oryza sativa Japonica Group mRNA for transcription factor, complete cds.
GenBank	AK099540	0.0	AK099540.1 Oryza sativa Japonica Group cDNA clone:J013032G17, full insert sequence.
GenBank	EU846998	0.0	EU846998.1 Oryza sativa Japonica Group clone KCS104B01 NAM-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639255.1	0.0	NAC domain-containing protein 78 isoform X2
Swissprot	Q9FY82	6e-74	NAC82_ARATH; NAC domain-containing protein 82
TrEMBL	A0A0D9WGR5	0.0	A0A0D9WGR5_9ORYZ; Uncharacterized protein
STRING	LPERR05G13650.2	1e-151	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64060.1	4e-83	NAC domain containing protein 103

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Deeken R, et al. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J., 2008. 55(5): p. 746-59 [PMID:18485061] Ohbayashi I, et al. Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis. Plant Cell, 2017. 29(10): p. 2644-2660 [PMID:28899981]